miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 3' -54.1 NC_002512.2 + 10177 0.68 0.955128
Target:  5'- cGCCUCucgCGCCccgagCgcCGACGCuCCUCc -3'
miRNA:   3'- -CGGAGua-GCGGaa---GauGCUGUG-GGAG- -5'
8965 3' -54.1 NC_002512.2 + 2200 0.69 0.922839
Target:  5'- cGCCgUCGUCGUCUcggUCgccgGCGGCGCCgccgCUCu -3'
miRNA:   3'- -CGG-AGUAGCGGA---AGa---UGCUGUGG----GAG- -5'
8965 3' -54.1 NC_002512.2 + 1366 0.69 0.916737
Target:  5'- uCCUCGUCGCCUccgUCUcuccuccGCGu--CCCUCu -3'
miRNA:   3'- cGGAGUAGCGGA---AGA-------UGCuguGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 129362 0.69 0.913871
Target:  5'- aGCgUCGUCGCCUUCUGucucgugcgggugcuCGACGaccgcggCCUCc -3'
miRNA:   3'- -CGgAGUAGCGGAAGAU---------------GCUGUg------GGAG- -5'
8965 3' -54.1 NC_002512.2 + 24375 0.69 0.911536
Target:  5'- cGCUcgaagUCGUCGUCcUCcGCGACGCCgUCg -3'
miRNA:   3'- -CGG-----AGUAGCGGaAGaUGCUGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 115982 0.69 0.922839
Target:  5'- cGCCUCGUcgaCGUCUUCUGCGccugcaacCGCUUUCg -3'
miRNA:   3'- -CGGAGUA---GCGGAAGAUGCu-------GUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 166993 0.69 0.935179
Target:  5'- aCCUgCAaCGCCUUCUACGGCuucaccggcgucgcgGCCC-Cg -3'
miRNA:   3'- cGGA-GUaGCGGAAGAUGCUG---------------UGGGaG- -5'
8965 3' -54.1 NC_002512.2 + 229812 0.69 0.933215
Target:  5'- cGCCUC-UCGCCUcCU-CG-CGCCCg- -3'
miRNA:   3'- -CGGAGuAGCGGAaGAuGCuGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 409 0.69 0.933215
Target:  5'- cGCCUC-UCGCCUcCU-CG-CGCCCg- -3'
miRNA:   3'- -CGGAGuAGCGGAaGAuGCuGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 225354 0.69 0.922839
Target:  5'- cGCCUCAccgUCGCCgcuUCUccucCucCACCCUCg -3'
miRNA:   3'- -CGGAGU---AGCGGa--AGAu---GcuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 186288 0.69 0.922839
Target:  5'- aGCCUCcgCGuCCUcgUCcGCGACGCCgUg -3'
miRNA:   3'- -CGGAGuaGC-GGA--AGaUGCUGUGGgAg -5'
8965 3' -54.1 NC_002512.2 + 94629 0.69 0.911536
Target:  5'- gGCCUCGUCGagcgCggCgcggACGACGgCCUCg -3'
miRNA:   3'- -CGGAGUAGCg---GaaGa---UGCUGUgGGAG- -5'
8965 3' -54.1 NC_002512.2 + 164427 0.7 0.905539
Target:  5'- cGCCaugCAggUCGCCgggaagccgCU-CGGCGCCCUCg -3'
miRNA:   3'- -CGGa--GU--AGCGGaa-------GAuGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 217190 0.7 0.899314
Target:  5'- cCCUCcgCGCCaggUUGCG-CAUCCUCg -3'
miRNA:   3'- cGGAGuaGCGGaa-GAUGCuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 131003 0.7 0.899314
Target:  5'- cGUC-CGUCGUCUUCgucuuCGACGCgCUCg -3'
miRNA:   3'- -CGGaGUAGCGGAAGau---GCUGUGgGAG- -5'
8965 3' -54.1 NC_002512.2 + 21127 0.7 0.892864
Target:  5'- gGCCUUccgcuUCGgCUUCcuggGCGACugCCUCc -3'
miRNA:   3'- -CGGAGu----AGCgGAAGa---UGCUGugGGAG- -5'
8965 3' -54.1 NC_002512.2 + 66450 0.7 0.878601
Target:  5'- cGUCUCuccucCGCCggCUACgugagguauuguuGACACCCUCg -3'
miRNA:   3'- -CGGAGua---GCGGaaGAUG-------------CUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 108172 0.7 0.899314
Target:  5'- cGCCgg--CGCCUUCUGCGGCGuuCa- -3'
miRNA:   3'- -CGGaguaGCGGAAGAUGCUGUggGag -5'
8965 3' -54.1 NC_002512.2 + 147601 0.7 0.892864
Target:  5'- cGCC-CGUCGCCU----CGACccgACCCUCg -3'
miRNA:   3'- -CGGaGUAGCGGAagauGCUG---UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 183316 0.7 0.879302
Target:  5'- cGCCaUCAcCGCCcgcUUCUucagccGCGAgACCCUCa -3'
miRNA:   3'- -CGG-AGUaGCGG---AAGA------UGCUgUGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.