miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 3' -54.1 NC_002512.2 + 142048 0.68 0.947044
Target:  5'- cGCCUCggCGCaUUUCgccuCGGC-CCCUCc -3'
miRNA:   3'- -CGGAGuaGCG-GAAGau--GCUGuGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 185767 0.68 0.947044
Target:  5'- aCCUCGUcuaCGCCUUCUcuuuCAUCCUCg -3'
miRNA:   3'- cGGAGUA---GCGGAAGAugcuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 192630 0.68 0.955128
Target:  5'- gGCCUCA---CCUUCUACGGCAacggCUCg -3'
miRNA:   3'- -CGGAGUagcGGAAGAUGCUGUgg--GAG- -5'
8965 3' -54.1 NC_002512.2 + 219393 0.68 0.955128
Target:  5'- uGCCUCcgcugGUCgGCCcgCcGCGACGCCCa- -3'
miRNA:   3'- -CGGAG-----UAG-CGGaaGaUGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 140435 0.68 0.955128
Target:  5'- cGCgUCGcUCGCCUUC--CGACACagCUCg -3'
miRNA:   3'- -CGgAGU-AGCGGAAGauGCUGUGg-GAG- -5'
8965 3' -54.1 NC_002512.2 + 10177 0.68 0.955128
Target:  5'- cGCCUCucgCGCCccgagCgcCGACGCuCCUCc -3'
miRNA:   3'- -CGGAGua-GCGGaa---GauGCUGUG-GGAG- -5'
8965 3' -54.1 NC_002512.2 + 207533 0.68 0.958837
Target:  5'- gGCCgCGUCcuCCcgCUGCGACuccuCCCUCg -3'
miRNA:   3'- -CGGaGUAGc-GGaaGAUGCUGu---GGGAG- -5'
8965 3' -54.1 NC_002512.2 + 140838 0.67 0.96233
Target:  5'- uCCUCGuUCGCCaccgACGAgAUCCUCg -3'
miRNA:   3'- cGGAGU-AGCGGaagaUGCUgUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 125031 0.67 0.96233
Target:  5'- gGCCgagGUCGCCgugagggACGAUACCUUCc -3'
miRNA:   3'- -CGGag-UAGCGGaaga---UGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 85967 0.67 0.96233
Target:  5'- -gCUCGUCGUCg---GCGAguuCGCCCUCu -3'
miRNA:   3'- cgGAGUAGCGGaagaUGCU---GUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 166048 0.67 0.96233
Target:  5'- gGUCaUCAagGUCUUCUGCGcggGCACCgUCg -3'
miRNA:   3'- -CGG-AGUagCGGAAGAUGC---UGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 1218 0.67 0.96233
Target:  5'- aCCUUcUCGUCUUCUcccUGGCACCuCUCu -3'
miRNA:   3'- cGGAGuAGCGGAAGAu--GCUGUGG-GAG- -5'
8965 3' -54.1 NC_002512.2 + 154818 0.67 0.96233
Target:  5'- cGCCUCgacGUCGCCgcccggUCUcCccCGCCCUCc -3'
miRNA:   3'- -CGGAG---UAGCGGa-----AGAuGcuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 214662 0.67 0.96233
Target:  5'- uCCUCccggCGCCUcg-GCGACccGCCCUCc -3'
miRNA:   3'- cGGAGua--GCGGAagaUGCUG--UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 2007 0.67 0.965612
Target:  5'- cGCCcgCGUCGCCUgagcCGGCACCa-- -3'
miRNA:   3'- -CGGa-GUAGCGGAagauGCUGUGGgag -5'
8965 3' -54.1 NC_002512.2 + 186594 0.67 0.965612
Target:  5'- cGCCUCuacccCGaCCUguUCgACGACcCCCUCa -3'
miRNA:   3'- -CGGAGua---GC-GGA--AGaUGCUGuGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 3145 0.67 0.965612
Target:  5'- cGCCUC--CGCCgUCUccGgGACAgCCUCg -3'
miRNA:   3'- -CGGAGuaGCGGaAGA--UgCUGUgGGAG- -5'
8965 3' -54.1 NC_002512.2 + 172264 0.67 0.965612
Target:  5'- cGCCUCA-CGCCcgCU-CGGuCGCCCg- -3'
miRNA:   3'- -CGGAGUaGCGGaaGAuGCU-GUGGGag -5'
8965 3' -54.1 NC_002512.2 + 135243 0.67 0.965612
Target:  5'- cGCCUCGagGCCgucgUCcGCGcCGCgCUCg -3'
miRNA:   3'- -CGGAGUagCGGa---AGaUGCuGUGgGAG- -5'
8965 3' -54.1 NC_002512.2 + 106914 0.67 0.965612
Target:  5'- cGCCUCuuccUCGUCcUCgucgaGCGACACCUcgUCg -3'
miRNA:   3'- -CGGAGu---AGCGGaAGa----UGCUGUGGG--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.