miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 3' -54.1 NC_002512.2 + 409 0.69 0.933215
Target:  5'- cGCCUC-UCGCCUcCU-CG-CGCCCg- -3'
miRNA:   3'- -CGGAGuAGCGGAaGAuGCuGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 229812 0.69 0.933215
Target:  5'- cGCCUC-UCGCCUcCU-CG-CGCCCg- -3'
miRNA:   3'- -CGGAGuAGCGGAaGAuGCuGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 166993 0.69 0.935179
Target:  5'- aCCUgCAaCGCCUUCUACGGCuucaccggcgucgcgGCCC-Cg -3'
miRNA:   3'- cGGA-GUaGCGGAAGAUGCUG---------------UGGGaG- -5'
8965 3' -54.1 NC_002512.2 + 212989 0.68 0.946617
Target:  5'- aCCUCAUCGUCgcc-GCGGCcgucgggcccgggGCCCUCu -3'
miRNA:   3'- cGGAGUAGCGGaagaUGCUG-------------UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 142048 0.68 0.947044
Target:  5'- cGCCUCggCGCaUUUCgccuCGGC-CCCUCc -3'
miRNA:   3'- -CGGAGuaGCG-GAAGau--GCUGuGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 185767 0.68 0.947044
Target:  5'- aCCUCGUcuaCGCCUUCUcuuuCAUCCUCg -3'
miRNA:   3'- cGGAGUA---GCGGAAGAugcuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 192630 0.68 0.955128
Target:  5'- gGCCUCA---CCUUCUACGGCAacggCUCg -3'
miRNA:   3'- -CGGAGUagcGGAAGAUGCUGUgg--GAG- -5'
8965 3' -54.1 NC_002512.2 + 140435 0.68 0.955128
Target:  5'- cGCgUCGcUCGCCUUC--CGACACagCUCg -3'
miRNA:   3'- -CGgAGU-AGCGGAAGauGCUGUGg-GAG- -5'
8965 3' -54.1 NC_002512.2 + 219393 0.68 0.955128
Target:  5'- uGCCUCcgcugGUCgGCCcgCcGCGACGCCCa- -3'
miRNA:   3'- -CGGAG-----UAG-CGGaaGaUGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 207533 0.68 0.958837
Target:  5'- gGCCgCGUCcuCCcgCUGCGACuccuCCCUCg -3'
miRNA:   3'- -CGGaGUAGc-GGaaGAUGCUGu---GGGAG- -5'
8965 3' -54.1 NC_002512.2 + 166048 0.67 0.96233
Target:  5'- gGUCaUCAagGUCUUCUGCGcggGCACCgUCg -3'
miRNA:   3'- -CGG-AGUagCGGAAGAUGC---UGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 1218 0.67 0.96233
Target:  5'- aCCUUcUCGUCUUCUcccUGGCACCuCUCu -3'
miRNA:   3'- cGGAGuAGCGGAAGAu--GCUGUGG-GAG- -5'
8965 3' -54.1 NC_002512.2 + 164427 0.7 0.905539
Target:  5'- cGCCaugCAggUCGCCgggaagccgCU-CGGCGCCCUCg -3'
miRNA:   3'- -CGGa--GU--AGCGGaa-------GAuGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 217190 0.7 0.899314
Target:  5'- cCCUCcgCGCCaggUUGCG-CAUCCUCg -3'
miRNA:   3'- cGGAGuaGCGGaa-GAUGCuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 108172 0.7 0.899314
Target:  5'- cGCCgg--CGCCUUCUGCGGCGuuCa- -3'
miRNA:   3'- -CGGaguaGCGGAAGAUGCUGUggGag -5'
8965 3' -54.1 NC_002512.2 + 147601 0.7 0.892864
Target:  5'- cGCC-CGUCGCCU----CGACccgACCCUCg -3'
miRNA:   3'- -CGGaGUAGCGGAagauGCUG---UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 183316 0.7 0.879302
Target:  5'- cGCCaUCAcCGCCcgcUUCUucagccGCGAgACCCUCa -3'
miRNA:   3'- -CGG-AGUaGCGG---AAGA------UGCUgUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 191614 0.71 0.841749
Target:  5'- uCCUCggCGUCUUCUcgcGCGAU-CCCUCg -3'
miRNA:   3'- cGGAGuaGCGGAAGA---UGCUGuGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 170866 0.71 0.833658
Target:  5'- cGCCUCGaCGCCcUCUaugaGCGGC-UCCUCg -3'
miRNA:   3'- -CGGAGUaGCGGaAGA----UGCUGuGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 143538 0.72 0.825389
Target:  5'- gGCCUCGUCGCCgUCgGCGGCcgcGCgUCUCc -3'
miRNA:   3'- -CGGAGUAGCGGaAGaUGCUG---UG-GGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.