Results 41 - 60 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8965 | 3' | -54.1 | NC_002512.2 | + | 409 | 0.69 | 0.933215 |
Target: 5'- cGCCUC-UCGCCUcCU-CG-CGCCCg- -3' miRNA: 3'- -CGGAGuAGCGGAaGAuGCuGUGGGag -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 229812 | 0.69 | 0.933215 |
Target: 5'- cGCCUC-UCGCCUcCU-CG-CGCCCg- -3' miRNA: 3'- -CGGAGuAGCGGAaGAuGCuGUGGGag -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 166993 | 0.69 | 0.935179 |
Target: 5'- aCCUgCAaCGCCUUCUACGGCuucaccggcgucgcgGCCC-Cg -3' miRNA: 3'- cGGA-GUaGCGGAAGAUGCUG---------------UGGGaG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 212989 | 0.68 | 0.946617 |
Target: 5'- aCCUCAUCGUCgcc-GCGGCcgucgggcccgggGCCCUCu -3' miRNA: 3'- cGGAGUAGCGGaagaUGCUG-------------UGGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 142048 | 0.68 | 0.947044 |
Target: 5'- cGCCUCggCGCaUUUCgccuCGGC-CCCUCc -3' miRNA: 3'- -CGGAGuaGCG-GAAGau--GCUGuGGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 185767 | 0.68 | 0.947044 |
Target: 5'- aCCUCGUcuaCGCCUUCUcuuuCAUCCUCg -3' miRNA: 3'- cGGAGUA---GCGGAAGAugcuGUGGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 192630 | 0.68 | 0.955128 |
Target: 5'- gGCCUCA---CCUUCUACGGCAacggCUCg -3' miRNA: 3'- -CGGAGUagcGGAAGAUGCUGUgg--GAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 140435 | 0.68 | 0.955128 |
Target: 5'- cGCgUCGcUCGCCUUC--CGACACagCUCg -3' miRNA: 3'- -CGgAGU-AGCGGAAGauGCUGUGg-GAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 219393 | 0.68 | 0.955128 |
Target: 5'- uGCCUCcgcugGUCgGCCcgCcGCGACGCCCa- -3' miRNA: 3'- -CGGAG-----UAG-CGGaaGaUGCUGUGGGag -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 207533 | 0.68 | 0.958837 |
Target: 5'- gGCCgCGUCcuCCcgCUGCGACuccuCCCUCg -3' miRNA: 3'- -CGGaGUAGc-GGaaGAUGCUGu---GGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 166048 | 0.67 | 0.96233 |
Target: 5'- gGUCaUCAagGUCUUCUGCGcggGCACCgUCg -3' miRNA: 3'- -CGG-AGUagCGGAAGAUGC---UGUGGgAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 1218 | 0.67 | 0.96233 |
Target: 5'- aCCUUcUCGUCUUCUcccUGGCACCuCUCu -3' miRNA: 3'- cGGAGuAGCGGAAGAu--GCUGUGG-GAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 164427 | 0.7 | 0.905539 |
Target: 5'- cGCCaugCAggUCGCCgggaagccgCU-CGGCGCCCUCg -3' miRNA: 3'- -CGGa--GU--AGCGGaa-------GAuGCUGUGGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 217190 | 0.7 | 0.899314 |
Target: 5'- cCCUCcgCGCCaggUUGCG-CAUCCUCg -3' miRNA: 3'- cGGAGuaGCGGaa-GAUGCuGUGGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 108172 | 0.7 | 0.899314 |
Target: 5'- cGCCgg--CGCCUUCUGCGGCGuuCa- -3' miRNA: 3'- -CGGaguaGCGGAAGAUGCUGUggGag -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 147601 | 0.7 | 0.892864 |
Target: 5'- cGCC-CGUCGCCU----CGACccgACCCUCg -3' miRNA: 3'- -CGGaGUAGCGGAagauGCUG---UGGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 183316 | 0.7 | 0.879302 |
Target: 5'- cGCCaUCAcCGCCcgcUUCUucagccGCGAgACCCUCa -3' miRNA: 3'- -CGG-AGUaGCGG---AAGA------UGCUgUGGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 191614 | 0.71 | 0.841749 |
Target: 5'- uCCUCggCGUCUUCUcgcGCGAU-CCCUCg -3' miRNA: 3'- cGGAGuaGCGGAAGA---UGCUGuGGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 170866 | 0.71 | 0.833658 |
Target: 5'- cGCCUCGaCGCCcUCUaugaGCGGC-UCCUCg -3' miRNA: 3'- -CGGAGUaGCGGaAGA----UGCUGuGGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 143538 | 0.72 | 0.825389 |
Target: 5'- gGCCUCGUCGCCgUCgGCGGCcgcGCgUCUCc -3' miRNA: 3'- -CGGAGUAGCGGaAGaUGCUG---UG-GGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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