miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 5' -54.6 NC_002512.2 + 74668 0.68 0.936781
Target:  5'- -cGCGGGcGCGUUUCGGuucccuuCGACGAacGGUc -3'
miRNA:   3'- cuCGUCCaCGCAAAGCU-------GCUGCU--CCA- -5'
8965 5' -54.6 NC_002512.2 + 165554 0.68 0.932396
Target:  5'- cGAGCuGGacUGCcaggUCGGCGACGuGGUg -3'
miRNA:   3'- -CUCGuCC--ACGcaa-AGCUGCUGCuCCA- -5'
8965 5' -54.6 NC_002512.2 + 16748 0.68 0.929369
Target:  5'- uGAGCGGGUGCGag-CGccaguacugguagucGCG-CGGGGUg -3'
miRNA:   3'- -CUCGUCCACGCaaaGC---------------UGCuGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 114764 0.69 0.921983
Target:  5'- --cCAGGUGCGcgggUCG-CGACGGGGc -3'
miRNA:   3'- cucGUCCACGCaa--AGCuGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 213079 0.69 0.921983
Target:  5'- cGGGCuacGUGCucuucgUCGGCGGCGAGGa -3'
miRNA:   3'- -CUCGuc-CACGcaa---AGCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 99984 0.69 0.91643
Target:  5'- gGAGaCGGGagaGCGgaUCGuCGGCGAGGg -3'
miRNA:   3'- -CUC-GUCCa--CGCaaAGCuGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 105350 0.69 0.91643
Target:  5'- aGGUAGGaguugGCGUagaUGACGGCGGGGUu -3'
miRNA:   3'- cUCGUCCa----CGCAaa-GCUGCUGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 75058 0.69 0.91643
Target:  5'- aGGGCGGGggagaccggGCGg--CGACGuCGAGGc -3'
miRNA:   3'- -CUCGUCCa--------CGCaaaGCUGCuGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 100061 0.69 0.910649
Target:  5'- -cGCGGGggcgGCGgcgcCGACGACGAGa- -3'
miRNA:   3'- cuCGUCCa---CGCaaa-GCUGCUGCUCca -5'
8965 5' -54.6 NC_002512.2 + 224244 0.69 0.904639
Target:  5'- uGAGCGGGggagGCGggUCGGCGcccgacgcccGCGAGa- -3'
miRNA:   3'- -CUCGUCCa---CGCaaAGCUGC----------UGCUCca -5'
8965 5' -54.6 NC_002512.2 + 119763 0.69 0.904639
Target:  5'- cGAGCGac-GCGUcgcggUCGACGGCGGGGa -3'
miRNA:   3'- -CUCGUccaCGCAa----AGCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 45528 0.69 0.891946
Target:  5'- cGGCGGGcgGCGg--CGGCGACuuGGGGUa -3'
miRNA:   3'- cUCGUCCa-CGCaaaGCUGCUG--CUCCA- -5'
8965 5' -54.6 NC_002512.2 + 202511 0.69 0.891946
Target:  5'- cGGCGGcGgagGCGgaggCGGCGGCGGGGg -3'
miRNA:   3'- cUCGUC-Ca--CGCaaa-GCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 81975 0.7 0.871267
Target:  5'- cGGGCGGGUGg----UGGCGGCGGGGg -3'
miRNA:   3'- -CUCGUCCACgcaaaGCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 132227 0.7 0.871267
Target:  5'- uGAGCAGcuccUGCGa---GACGGCGAGGUu -3'
miRNA:   3'- -CUCGUCc---ACGCaaagCUGCUGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 147668 0.71 0.84873
Target:  5'- -cGCGGGgGCG---CGACGACGGGGa -3'
miRNA:   3'- cuCGUCCaCGCaaaGCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 225540 0.71 0.844013
Target:  5'- cGGCGGGaGCGcggaggacgacuucUUCGGCGACGAGGc -3'
miRNA:   3'- cUCGUCCaCGCa-------------AAGCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 14664 0.71 0.840831
Target:  5'- cGAGCAGGUagacgGCGUUguccgccccgcCGACGAaGAGGUa -3'
miRNA:   3'- -CUCGUCCA-----CGCAAa----------GCUGCUgCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 117714 0.71 0.832749
Target:  5'- cGGCGGGUGCGcagCGACauggguGCGAGGg -3'
miRNA:   3'- cUCGUCCACGCaaaGCUGc-----UGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 100288 0.72 0.789848
Target:  5'- cGAGCGGG-GCGagUUCGucggggGCGACGGGGc -3'
miRNA:   3'- -CUCGUCCaCGCa-AAGC------UGCUGCUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.