Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8965 | 5' | -54.6 | NC_002512.2 | + | 198005 | 0.66 | 0.971001 |
Target: 5'- cGAGCGGGcGaCGga-CGGgGGCGAGGg -3' miRNA: 3'- -CUCGUCCaC-GCaaaGCUgCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 227275 | 0.66 | 0.971001 |
Target: 5'- uGGCAGG-GCGgg-CGAaCGauGCGAGGUu -3' miRNA: 3'- cUCGUCCaCGCaaaGCU-GC--UGCUCCA- -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 43028 | 0.66 | 0.971001 |
Target: 5'- uGGGCAGGUcgagGCGcagguccUCGGCGACGcgcAGGg -3' miRNA: 3'- -CUCGUCCA----CGCaa-----AGCUGCUGC---UCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 89667 | 0.67 | 0.968098 |
Target: 5'- cGAGaCGcGGUGCGaa--GGCGGCGGGGc -3' miRNA: 3'- -CUC-GU-CCACGCaaagCUGCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 189061 | 0.67 | 0.964994 |
Target: 5'- gGAGCGGccgGCGgcgcucUCGACGGCGAGu- -3' miRNA: 3'- -CUCGUCca-CGCaa----AGCUGCUGCUCca -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 118945 | 0.67 | 0.961684 |
Target: 5'- cGAGCucgAGGggaGCGUggggCGGCGGCggGAGGUg -3' miRNA: 3'- -CUCG---UCCa--CGCAaa--GCUGCUG--CUCCA- -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 34934 | 0.67 | 0.961684 |
Target: 5'- cGGCGGG-GUcg--CGGCGACGGGGa -3' miRNA: 3'- cUCGUCCaCGcaaaGCUGCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 67943 | 0.67 | 0.954427 |
Target: 5'- -uGCAGGUGaauucgacuaCGUUUCGAUGAUGucGUg -3' miRNA: 3'- cuCGUCCAC----------GCAAAGCUGCUGCucCA- -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 42971 | 0.67 | 0.954427 |
Target: 5'- cGGGCAGGUagacGCGcuggUUCc-CGACGAGGg -3' miRNA: 3'- -CUCGUCCA----CGCa---AAGcuGCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 97072 | 0.67 | 0.954427 |
Target: 5'- -uGCuGGGUGCGgaUCuucuuccggaagGACGGCGGGGg -3' miRNA: 3'- cuCG-UCCACGCaaAG------------CUGCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 88541 | 0.67 | 0.950471 |
Target: 5'- aGGaCGGGUGgaGggUCGAgGugGAGGUg -3' miRNA: 3'- cUC-GUCCACg-CaaAGCUgCugCUCCA- -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 54259 | 0.67 | 0.950471 |
Target: 5'- cGGCAGGgcgGCGgcgUCGGCGACccuGGc -3' miRNA: 3'- cUCGUCCa--CGCaa-AGCUGCUGcu-CCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 205438 | 0.67 | 0.950471 |
Target: 5'- aGGCGccccaccGUGCGUUcgGACGACGAGGa -3' miRNA: 3'- cUCGUc------CACGCAAagCUGCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 128192 | 0.68 | 0.946293 |
Target: 5'- cGAGCGGGccgccgGCGggacCGGgGACGGGGa -3' miRNA: 3'- -CUCGUCCa-----CGCaaa-GCUgCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 108365 | 0.68 | 0.946293 |
Target: 5'- cGGGCGGGUGgGggaUCGGgagGGCGGGGg -3' miRNA: 3'- -CUCGUCCACgCaa-AGCUg--CUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 58083 | 0.68 | 0.946293 |
Target: 5'- cAGCAGGaGCGcgcgccgUCGG-GACGAGGUg -3' miRNA: 3'- cUCGUCCaCGCaa-----AGCUgCUGCUCCA- -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 128717 | 0.68 | 0.944558 |
Target: 5'- cGGGCAGGUGUGgaggcugggaGACGGCGgacggcgcucaAGGUg -3' miRNA: 3'- -CUCGUCCACGCaaag------CUGCUGC-----------UCCA- -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 103465 | 0.68 | 0.941889 |
Target: 5'- cGGGCGGGaggaggagagGCGgcgUCGACGGCGcccGGGg -3' miRNA: 3'- -CUCGUCCa---------CGCaa-AGCUGCUGC---UCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 97368 | 0.68 | 0.941889 |
Target: 5'- gGAGCGGGgaccGCGg--CGGCcggaGACGGGGg -3' miRNA: 3'- -CUCGUCCa---CGCaaaGCUG----CUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 208562 | 0.68 | 0.939137 |
Target: 5'- aGGGC-GGUGCGUcaggccgagUCGACGcgcagcggguccgggACGAGGUc -3' miRNA: 3'- -CUCGuCCACGCAa--------AGCUGC---------------UGCUCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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