miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 5' -54.6 NC_002512.2 + 99984 0.69 0.91643
Target:  5'- gGAGaCGGGagaGCGgaUCGuCGGCGAGGg -3'
miRNA:   3'- -CUC-GUCCa--CGCaaAGCuGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 75058 0.69 0.91643
Target:  5'- aGGGCGGGggagaccggGCGg--CGACGuCGAGGc -3'
miRNA:   3'- -CUCGUCCa--------CGCaaaGCUGCuGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 114764 0.69 0.921983
Target:  5'- --cCAGGUGCGcgggUCG-CGACGGGGc -3'
miRNA:   3'- cucGUCCACGCaa--AGCuGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 213079 0.69 0.921983
Target:  5'- cGGGCuacGUGCucuucgUCGGCGGCGAGGa -3'
miRNA:   3'- -CUCGuc-CACGcaa---AGCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 16748 0.68 0.929369
Target:  5'- uGAGCGGGUGCGag-CGccaguacugguagucGCG-CGGGGUg -3'
miRNA:   3'- -CUCGUCCACGCaaaGC---------------UGCuGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 165554 0.68 0.932396
Target:  5'- cGAGCuGGacUGCcaggUCGGCGACGuGGUg -3'
miRNA:   3'- -CUCGuCC--ACGcaa-AGCUGCUGCuCCA- -5'
8965 5' -54.6 NC_002512.2 + 74668 0.68 0.936781
Target:  5'- -cGCGGGcGCGUUUCGGuucccuuCGACGAacGGUc -3'
miRNA:   3'- cuCGUCCaCGCAAAGCU-------GCUGCU--CCA- -5'
8965 5' -54.6 NC_002512.2 + 208562 0.68 0.939137
Target:  5'- aGGGC-GGUGCGUcaggccgagUCGACGcgcagcggguccgggACGAGGUc -3'
miRNA:   3'- -CUCGuCCACGCAa--------AGCUGC---------------UGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 97368 0.68 0.941889
Target:  5'- gGAGCGGGgaccGCGg--CGGCcggaGACGGGGg -3'
miRNA:   3'- -CUCGUCCa---CGCaaaGCUG----CUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 103465 0.68 0.941889
Target:  5'- cGGGCGGGaggaggagagGCGgcgUCGACGGCGcccGGGg -3'
miRNA:   3'- -CUCGUCCa---------CGCaa-AGCUGCUGC---UCCa -5'
8965 5' -54.6 NC_002512.2 + 128717 0.68 0.944558
Target:  5'- cGGGCAGGUGUGgaggcugggaGACGGCGgacggcgcucaAGGUg -3'
miRNA:   3'- -CUCGUCCACGCaaag------CUGCUGC-----------UCCA- -5'
8965 5' -54.6 NC_002512.2 + 128192 0.68 0.946293
Target:  5'- cGAGCGGGccgccgGCGggacCGGgGACGGGGa -3'
miRNA:   3'- -CUCGUCCa-----CGCaaa-GCUgCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 108365 0.68 0.946293
Target:  5'- cGGGCGGGUGgGggaUCGGgagGGCGGGGg -3'
miRNA:   3'- -CUCGUCCACgCaa-AGCUg--CUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 58083 0.68 0.946293
Target:  5'- cAGCAGGaGCGcgcgccgUCGG-GACGAGGUg -3'
miRNA:   3'- cUCGUCCaCGCaa-----AGCUgCUGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 88541 0.67 0.950471
Target:  5'- aGGaCGGGUGgaGggUCGAgGugGAGGUg -3'
miRNA:   3'- cUC-GUCCACg-CaaAGCUgCugCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 205438 0.67 0.950471
Target:  5'- aGGCGccccaccGUGCGUUcgGACGACGAGGa -3'
miRNA:   3'- cUCGUc------CACGCAAagCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 54259 0.67 0.950471
Target:  5'- cGGCAGGgcgGCGgcgUCGGCGACccuGGc -3'
miRNA:   3'- cUCGUCCa--CGCaa-AGCUGCUGcu-CCa -5'
8965 5' -54.6 NC_002512.2 + 97072 0.67 0.954427
Target:  5'- -uGCuGGGUGCGgaUCuucuuccggaagGACGGCGGGGg -3'
miRNA:   3'- cuCG-UCCACGCaaAG------------CUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 42971 0.67 0.954427
Target:  5'- cGGGCAGGUagacGCGcuggUUCc-CGACGAGGg -3'
miRNA:   3'- -CUCGUCCA----CGCa---AAGcuGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 67943 0.67 0.954427
Target:  5'- -uGCAGGUGaauucgacuaCGUUUCGAUGAUGucGUg -3'
miRNA:   3'- cuCGUCCAC----------GCAAAGCUGCUGCucCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.