miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 5' -54.6 NC_002512.2 + 208360 1.08 0.007546
Target:  5'- gGAGCAGGUGCGUUUCGACGACGAGGUg -3'
miRNA:   3'- -CUCGUCCACGCAAAGCUGCUGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 191267 0.75 0.634879
Target:  5'- aGGGCGGGgagGCGg--CGACGGgGAGGg -3'
miRNA:   3'- -CUCGUCCa--CGCaaaGCUGCUgCUCCa -5'
8965 5' -54.6 NC_002512.2 + 162006 0.73 0.739708
Target:  5'- -uGCGGGaUGCGgaccgccuggcCGACGGCGAGGUg -3'
miRNA:   3'- cuCGUCC-ACGCaaa--------GCUGCUGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 124755 0.73 0.74353
Target:  5'- -cGuCGGGUGCGg--CGACGACG-GGUg -3'
miRNA:   3'- cuC-GUCCACGCaaaGCUGCUGCuCCA- -5'
8965 5' -54.6 NC_002512.2 + 6401 0.73 0.74353
Target:  5'- cGGGCAGGgagGCGg--CGGCGGCGcuGGGg -3'
miRNA:   3'- -CUCGUCCa--CGCaaaGCUGCUGC--UCCa -5'
8965 5' -54.6 NC_002512.2 + 191333 0.72 0.780824
Target:  5'- -cGCGGGUGCcg-UCcGCGACGGGGg -3'
miRNA:   3'- cuCGUCCACGcaaAGcUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 227619 0.72 0.780824
Target:  5'- aGGGC-GG-GCGg--CGGCGGCGAGGUc -3'
miRNA:   3'- -CUCGuCCaCGCaaaGCUGCUGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 100288 0.72 0.789848
Target:  5'- cGAGCGGG-GCGagUUCGucggggGCGACGGGGc -3'
miRNA:   3'- -CUCGUCCaCGCa-AAGC------UGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 117714 0.71 0.832749
Target:  5'- cGGCGGGUGCGcagCGACauggguGCGAGGg -3'
miRNA:   3'- cUCGUCCACGCaaaGCUGc-----UGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 14664 0.71 0.840831
Target:  5'- cGAGCAGGUagacgGCGUUguccgccccgcCGACGAaGAGGUa -3'
miRNA:   3'- -CUCGUCCA-----CGCAAa----------GCUGCUgCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 225540 0.71 0.844013
Target:  5'- cGGCGGGaGCGcggaggacgacuucUUCGGCGACGAGGc -3'
miRNA:   3'- cUCGUCCaCGCa-------------AAGCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 147668 0.71 0.84873
Target:  5'- -cGCGGGgGCG---CGACGACGGGGa -3'
miRNA:   3'- cuCGUCCaCGCaaaGCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 132227 0.7 0.871267
Target:  5'- uGAGCAGcuccUGCGa---GACGGCGAGGUu -3'
miRNA:   3'- -CUCGUCc---ACGCaaagCUGCUGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 81975 0.7 0.871267
Target:  5'- cGGGCGGGUGg----UGGCGGCGGGGg -3'
miRNA:   3'- -CUCGUCCACgcaaaGCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 202511 0.69 0.891946
Target:  5'- cGGCGGcGgagGCGgaggCGGCGGCGGGGg -3'
miRNA:   3'- cUCGUC-Ca--CGCaaa-GCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 45528 0.69 0.891946
Target:  5'- cGGCGGGcgGCGg--CGGCGACuuGGGGUa -3'
miRNA:   3'- cUCGUCCa-CGCaaaGCUGCUG--CUCCA- -5'
8965 5' -54.6 NC_002512.2 + 119763 0.69 0.904639
Target:  5'- cGAGCGac-GCGUcgcggUCGACGGCGGGGa -3'
miRNA:   3'- -CUCGUccaCGCAa----AGCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 224244 0.69 0.904639
Target:  5'- uGAGCGGGggagGCGggUCGGCGcccgacgcccGCGAGa- -3'
miRNA:   3'- -CUCGUCCa---CGCaaAGCUGC----------UGCUCca -5'
8965 5' -54.6 NC_002512.2 + 100061 0.69 0.910649
Target:  5'- -cGCGGGggcgGCGgcgcCGACGACGAGa- -3'
miRNA:   3'- cuCGUCCa---CGCaaa-GCUGCUGCUCca -5'
8965 5' -54.6 NC_002512.2 + 105350 0.69 0.91643
Target:  5'- aGGUAGGaguugGCGUagaUGACGGCGGGGUu -3'
miRNA:   3'- cUCGUCCa----CGCAaa-GCUGCUGCUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.