miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 5' -54.6 NC_002512.2 + 5201 0.66 0.97371
Target:  5'- cGGGCAGGaccGCGggccagcCGACGGCGGcGGg -3'
miRNA:   3'- -CUCGUCCa--CGCaaa----GCUGCUGCU-CCa -5'
8965 5' -54.6 NC_002512.2 + 6401 0.73 0.74353
Target:  5'- cGGGCAGGgagGCGg--CGGCGGCGcuGGGg -3'
miRNA:   3'- -CUCGUCCa--CGCaaaGCUGCUGC--UCCa -5'
8965 5' -54.6 NC_002512.2 + 14664 0.71 0.840831
Target:  5'- cGAGCAGGUagacgGCGUUguccgccccgcCGACGAaGAGGUa -3'
miRNA:   3'- -CUCGUCCA-----CGCAAa----------GCUGCUgCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 16748 0.68 0.929369
Target:  5'- uGAGCGGGUGCGag-CGccaguacugguagucGCG-CGGGGUg -3'
miRNA:   3'- -CUCGUCCACGCaaaGC---------------UGCuGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 16892 0.66 0.980733
Target:  5'- cGGGCccgacGGccGCGg--CGACGAUGAGGUc -3'
miRNA:   3'- -CUCGu----CCa-CGCaaaGCUGCUGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 19779 0.66 0.978343
Target:  5'- aGGGCAGG-GCGUacUCGACGuCGcacuugaAGGUc -3'
miRNA:   3'- -CUCGUCCaCGCAa-AGCUGCuGC-------UCCA- -5'
8965 5' -54.6 NC_002512.2 + 34934 0.67 0.961684
Target:  5'- cGGCGGG-GUcg--CGGCGACGGGGa -3'
miRNA:   3'- cUCGUCCaCGcaaaGCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 35260 0.66 0.978116
Target:  5'- cGGGCAGGUcccccGCGgcgacggccgCGGCGGCgGAGGc -3'
miRNA:   3'- -CUCGUCCA-----CGCaaa-------GCUGCUG-CUCCa -5'
8965 5' -54.6 NC_002512.2 + 42572 0.66 0.980733
Target:  5'- cGGGCGGGcgccGCGaggCGAgCGGCGGGGc -3'
miRNA:   3'- -CUCGUCCa---CGCaaaGCU-GCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 42875 0.66 0.980733
Target:  5'- cGAGCGGaUGCc---CGACGGCGuGGUg -3'
miRNA:   3'- -CUCGUCcACGcaaaGCUGCUGCuCCA- -5'
8965 5' -54.6 NC_002512.2 + 42971 0.67 0.954427
Target:  5'- cGGGCAGGUagacGCGcuggUUCc-CGACGAGGg -3'
miRNA:   3'- -CUCGUCCA----CGCa---AAGcuGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 43028 0.66 0.971001
Target:  5'- uGGGCAGGUcgagGCGcagguccUCGGCGACGcgcAGGg -3'
miRNA:   3'- -CUCGUCCA----CGCaa-----AGCUGCUGC---UCCa -5'
8965 5' -54.6 NC_002512.2 + 45528 0.69 0.891946
Target:  5'- cGGCGGGcgGCGg--CGGCGACuuGGGGUa -3'
miRNA:   3'- cUCGUCCa-CGCaaaGCUGCUG--CUCCA- -5'
8965 5' -54.6 NC_002512.2 + 46712 0.66 0.977655
Target:  5'- aAGCuGGUgGCGUacgucauggcggCGGCGGCGGGGa -3'
miRNA:   3'- cUCGuCCA-CGCAaa----------GCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 54259 0.67 0.950471
Target:  5'- cGGCAGGgcgGCGgcgUCGGCGACccuGGc -3'
miRNA:   3'- cUCGUCCa--CGCaa-AGCUGCUGcu-CCa -5'
8965 5' -54.6 NC_002512.2 + 58083 0.68 0.946293
Target:  5'- cAGCAGGaGCGcgcgccgUCGG-GACGAGGUg -3'
miRNA:   3'- cUCGUCCaCGCaa-----AGCUgCUGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 67943 0.67 0.954427
Target:  5'- -uGCAGGUGaauucgacuaCGUUUCGAUGAUGucGUg -3'
miRNA:   3'- cuCGUCCAC----------GCAAAGCUGCUGCucCA- -5'
8965 5' -54.6 NC_002512.2 + 74668 0.68 0.936781
Target:  5'- -cGCGGGcGCGUUUCGGuucccuuCGACGAacGGUc -3'
miRNA:   3'- cuCGUCCaCGCAAAGCU-------GCUGCU--CCA- -5'
8965 5' -54.6 NC_002512.2 + 75058 0.69 0.91643
Target:  5'- aGGGCGGGggagaccggGCGg--CGACGuCGAGGc -3'
miRNA:   3'- -CUCGUCCa--------CGCaaaGCUGCuGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 81975 0.7 0.871267
Target:  5'- cGGGCGGGUGg----UGGCGGCGGGGg -3'
miRNA:   3'- -CUCGUCCACgcaaaGCUGCUGCUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.