miRNA display CGI


Results 21 - 40 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 5' -54.6 NC_002512.2 + 82960 0.66 0.980733
Target:  5'- cAGCAGGUcGCGg--CGcACGGCGcGGa -3'
miRNA:   3'- cUCGUCCA-CGCaaaGC-UGCUGCuCCa -5'
8965 5' -54.6 NC_002512.2 + 88541 0.67 0.950471
Target:  5'- aGGaCGGGUGgaGggUCGAgGugGAGGUg -3'
miRNA:   3'- cUC-GUCCACg-CaaAGCUgCugCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 89667 0.67 0.968098
Target:  5'- cGAGaCGcGGUGCGaa--GGCGGCGGGGc -3'
miRNA:   3'- -CUC-GU-CCACGCaaagCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 95281 0.66 0.978569
Target:  5'- cGGCGGGgucGgGUUcccgUCGGCGgACGAGGc -3'
miRNA:   3'- cUCGUCCa--CgCAA----AGCUGC-UGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 97072 0.67 0.954427
Target:  5'- -uGCuGGGUGCGgaUCuucuuccggaagGACGGCGGGGg -3'
miRNA:   3'- cuCG-UCCACGCaaAG------------CUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 97368 0.68 0.941889
Target:  5'- gGAGCGGGgaccGCGg--CGGCcggaGACGGGGg -3'
miRNA:   3'- -CUCGUCCa---CGCaaaGCUG----CUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 99984 0.69 0.91643
Target:  5'- gGAGaCGGGagaGCGgaUCGuCGGCGAGGg -3'
miRNA:   3'- -CUC-GUCCa--CGCaaAGCuGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 100061 0.69 0.910649
Target:  5'- -cGCGGGggcgGCGgcgcCGACGACGAGa- -3'
miRNA:   3'- cuCGUCCa---CGCaaa-GCUGCUGCUCca -5'
8965 5' -54.6 NC_002512.2 + 100288 0.72 0.789848
Target:  5'- cGAGCGGG-GCGagUUCGucggggGCGACGGGGc -3'
miRNA:   3'- -CUCGUCCaCGCa-AAGC------UGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 103465 0.68 0.941889
Target:  5'- cGGGCGGGaggaggagagGCGgcgUCGACGGCGcccGGGg -3'
miRNA:   3'- -CUCGUCCa---------CGCaa-AGCUGCUGC---UCCa -5'
8965 5' -54.6 NC_002512.2 + 105350 0.69 0.91643
Target:  5'- aGGUAGGaguugGCGUagaUGACGGCGGGGUu -3'
miRNA:   3'- cUCGUCCa----CGCAaa-GCUGCUGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 105769 0.66 0.978569
Target:  5'- -cGCGGauaaccuggGCGUcgcauggUCGACGGCGAGGg -3'
miRNA:   3'- cuCGUCca-------CGCAa------AGCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 108365 0.68 0.946293
Target:  5'- cGGGCGGGUGgGggaUCGGgagGGCGGGGg -3'
miRNA:   3'- -CUCGUCCACgCaa-AGCUg--CUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 114764 0.69 0.921983
Target:  5'- --cCAGGUGCGcgggUCG-CGACGGGGc -3'
miRNA:   3'- cucGUCCACGCaa--AGCuGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 117714 0.71 0.832749
Target:  5'- cGGCGGGUGCGcagCGACauggguGCGAGGg -3'
miRNA:   3'- cUCGUCCACGCaaaGCUGc-----UGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 118945 0.67 0.961684
Target:  5'- cGAGCucgAGGggaGCGUggggCGGCGGCggGAGGUg -3'
miRNA:   3'- -CUCG---UCCa--CGCAaa--GCUGCUG--CUCCA- -5'
8965 5' -54.6 NC_002512.2 + 119763 0.69 0.904639
Target:  5'- cGAGCGac-GCGUcgcggUCGACGGCGGGGa -3'
miRNA:   3'- -CUCGUccaCGCAa----AGCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 124755 0.73 0.74353
Target:  5'- -cGuCGGGUGCGg--CGACGACG-GGUg -3'
miRNA:   3'- cuC-GUCCACGCaaaGCUGCUGCuCCA- -5'
8965 5' -54.6 NC_002512.2 + 127091 0.66 0.976231
Target:  5'- gGAGCggAGGgcgGCGg--CGGCGGCGGGa- -3'
miRNA:   3'- -CUCG--UCCa--CGCaaaGCUGCUGCUCca -5'
8965 5' -54.6 NC_002512.2 + 128192 0.68 0.946293
Target:  5'- cGAGCGGGccgccgGCGggacCGGgGACGGGGa -3'
miRNA:   3'- -CUCGUCCa-----CGCaaa-GCUgCUGCUCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.