Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8965 | 5' | -54.6 | NC_002512.2 | + | 100288 | 0.72 | 0.789848 |
Target: 5'- cGAGCGGG-GCGagUUCGucggggGCGACGGGGc -3' miRNA: 3'- -CUCGUCCaCGCa-AAGC------UGCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 14664 | 0.71 | 0.840831 |
Target: 5'- cGAGCAGGUagacgGCGUUguccgccccgcCGACGAaGAGGUa -3' miRNA: 3'- -CUCGUCCA-----CGCAAa----------GCUGCUgCUCCA- -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 147668 | 0.71 | 0.84873 |
Target: 5'- -cGCGGGgGCG---CGACGACGGGGa -3' miRNA: 3'- cuCGUCCaCGCaaaGCUGCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 81975 | 0.7 | 0.871267 |
Target: 5'- cGGGCGGGUGg----UGGCGGCGGGGg -3' miRNA: 3'- -CUCGUCCACgcaaaGCUGCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 45528 | 0.69 | 0.891946 |
Target: 5'- cGGCGGGcgGCGg--CGGCGACuuGGGGUa -3' miRNA: 3'- cUCGUCCa-CGCaaaGCUGCUG--CUCCA- -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 100061 | 0.69 | 0.910649 |
Target: 5'- -cGCGGGggcgGCGgcgcCGACGACGAGa- -3' miRNA: 3'- cuCGUCCa---CGCaaa-GCUGCUGCUCca -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 75058 | 0.69 | 0.91643 |
Target: 5'- aGGGCGGGggagaccggGCGg--CGACGuCGAGGc -3' miRNA: 3'- -CUCGUCCa--------CGCaaaGCUGCuGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 58083 | 0.68 | 0.946293 |
Target: 5'- cAGCAGGaGCGcgcgccgUCGG-GACGAGGUg -3' miRNA: 3'- cUCGUCCaCGCaa-----AGCUgCUGCUCCA- -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 108365 | 0.68 | 0.946293 |
Target: 5'- cGGGCGGGUGgGggaUCGGgagGGCGGGGg -3' miRNA: 3'- -CUCGUCCACgCaa-AGCUg--CUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 128717 | 0.68 | 0.944558 |
Target: 5'- cGGGCAGGUGUGgaggcugggaGACGGCGgacggcgcucaAGGUg -3' miRNA: 3'- -CUCGUCCACGCaaag------CUGCUGC-----------UCCA- -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 103465 | 0.68 | 0.941889 |
Target: 5'- cGGGCGGGaggaggagagGCGgcgUCGACGGCGcccGGGg -3' miRNA: 3'- -CUCGUCCa---------CGCaa-AGCUGCUGC---UCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 97368 | 0.68 | 0.941889 |
Target: 5'- gGAGCGGGgaccGCGg--CGGCcggaGACGGGGg -3' miRNA: 3'- -CUCGUCCa---CGCaaaGCUG----CUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 16748 | 0.68 | 0.929369 |
Target: 5'- uGAGCGGGUGCGag-CGccaguacugguagucGCG-CGGGGUg -3' miRNA: 3'- -CUCGUCCACGCaaaGC---------------UGCuGCUCCA- -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 223095 | 0.66 | 0.976231 |
Target: 5'- -cGCGGcUGCG--UCGACGGgGAGGg -3' miRNA: 3'- cuCGUCcACGCaaAGCUGCUgCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 221392 | 0.66 | 0.978569 |
Target: 5'- cGGGCGGGgcgcggGCGgggaGGCGGCG-GGUc -3' miRNA: 3'- -CUCGUCCa-----CGCaaagCUGCUGCuCCA- -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 193384 | 0.66 | 0.978569 |
Target: 5'- cGGGCGGGgacgacaccgaGUGUUUCuucauCGACGAGGa -3' miRNA: 3'- -CUCGUCCa----------CGCAAAGcu---GCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 105769 | 0.66 | 0.978569 |
Target: 5'- -cGCGGauaaccuggGCGUcgcauggUCGACGGCGAGGg -3' miRNA: 3'- cuCGUCca-------CGCAa------AGCUGCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 42875 | 0.66 | 0.980733 |
Target: 5'- cGAGCGGaUGCc---CGACGGCGuGGUg -3' miRNA: 3'- -CUCGUCcACGcaaaGCUGCUGCuCCA- -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 199816 | 0.66 | 0.980733 |
Target: 5'- -cGCGGGgGCGgaUCGG-GugGAGGg -3' miRNA: 3'- cuCGUCCaCGCaaAGCUgCugCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 208360 | 1.08 | 0.007546 |
Target: 5'- gGAGCAGGUGCGUUUCGACGACGAGGUg -3' miRNA: 3'- -CUCGUCCACGCAAAGCUGCUGCUCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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