miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 5' -54.6 NC_002512.2 + 227619 0.72 0.780824
Target:  5'- aGGGC-GG-GCGg--CGGCGGCGAGGUc -3'
miRNA:   3'- -CUCGuCCaCGCaaaGCUGCUGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 227275 0.66 0.971001
Target:  5'- uGGCAGG-GCGgg-CGAaCGauGCGAGGUu -3'
miRNA:   3'- cUCGUCCaCGCaaaGCU-GC--UGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 225540 0.71 0.844013
Target:  5'- cGGCGGGaGCGcggaggacgacuucUUCGGCGACGAGGc -3'
miRNA:   3'- cUCGUCCaCGCa-------------AAGCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 224244 0.69 0.904639
Target:  5'- uGAGCGGGggagGCGggUCGGCGcccgacgcccGCGAGa- -3'
miRNA:   3'- -CUCGUCCa---CGCaaAGCUGC----------UGCUCca -5'
8965 5' -54.6 NC_002512.2 + 223095 0.66 0.976231
Target:  5'- -cGCGGcUGCG--UCGACGGgGAGGg -3'
miRNA:   3'- cuCGUCcACGCaaAGCUGCUgCUCCa -5'
8965 5' -54.6 NC_002512.2 + 221392 0.66 0.978569
Target:  5'- cGGGCGGGgcgcggGCGgggaGGCGGCG-GGUc -3'
miRNA:   3'- -CUCGUCCa-----CGCaaagCUGCUGCuCCA- -5'
8965 5' -54.6 NC_002512.2 + 220613 0.66 0.97371
Target:  5'- cGAGCuGGUGCuGUgccgggacugCGACGACGucGUc -3'
miRNA:   3'- -CUCGuCCACG-CAaa--------GCUGCUGCucCA- -5'
8965 5' -54.6 NC_002512.2 + 213079 0.69 0.921983
Target:  5'- cGGGCuacGUGCucuucgUCGGCGGCGAGGa -3'
miRNA:   3'- -CUCGuc-CACGcaa---AGCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 209171 0.66 0.980733
Target:  5'- cGGCAcGGcGCGcaagauccUCGugGACGAGGa -3'
miRNA:   3'- cUCGU-CCaCGCaa------AGCugCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 208562 0.68 0.939137
Target:  5'- aGGGC-GGUGCGUcaggccgagUCGACGcgcagcggguccgggACGAGGUc -3'
miRNA:   3'- -CUCGuCCACGCAa--------AGCUGC---------------UGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 208360 1.08 0.007546
Target:  5'- gGAGCAGGUGCGUUUCGACGACGAGGUg -3'
miRNA:   3'- -CUCGUCCACGCAAAGCUGCUGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 205438 0.67 0.950471
Target:  5'- aGGCGccccaccGUGCGUUcgGACGACGAGGa -3'
miRNA:   3'- cUCGUc------CACGCAAagCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 202511 0.69 0.891946
Target:  5'- cGGCGGcGgagGCGgaggCGGCGGCGGGGg -3'
miRNA:   3'- cUCGUC-Ca--CGCaaa-GCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 199816 0.66 0.980733
Target:  5'- -cGCGGGgGCGgaUCGG-GugGAGGg -3'
miRNA:   3'- cuCGUCCaCGCaaAGCUgCugCUCCa -5'
8965 5' -54.6 NC_002512.2 + 198005 0.66 0.971001
Target:  5'- cGAGCGGGcGaCGga-CGGgGGCGAGGg -3'
miRNA:   3'- -CUCGUCCaC-GCaaaGCUgCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 193384 0.66 0.978569
Target:  5'- cGGGCGGGgacgacaccgaGUGUUUCuucauCGACGAGGa -3'
miRNA:   3'- -CUCGUCCa----------CGCAAAGcu---GCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 191333 0.72 0.780824
Target:  5'- -cGCGGGUGCcg-UCcGCGACGGGGg -3'
miRNA:   3'- cuCGUCCACGcaaAGcUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 191267 0.75 0.634879
Target:  5'- aGGGCGGGgagGCGg--CGACGGgGAGGg -3'
miRNA:   3'- -CUCGUCCa--CGCaaaGCUGCUgCUCCa -5'
8965 5' -54.6 NC_002512.2 + 189893 0.66 0.976231
Target:  5'- cGGCGGcG-GCGaggaCGGCGGCGAGGa -3'
miRNA:   3'- cUCGUC-CaCGCaaa-GCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 189061 0.67 0.964994
Target:  5'- gGAGCGGccgGCGgcgcucUCGACGGCGAGu- -3'
miRNA:   3'- -CUCGUCca-CGCaa----AGCUGCUGCUCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.