Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8965 | 5' | -54.6 | NC_002512.2 | + | 193384 | 0.66 | 0.978569 |
Target: 5'- cGGGCGGGgacgacaccgaGUGUUUCuucauCGACGAGGa -3' miRNA: 3'- -CUCGUCCa----------CGCAAAGcu---GCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 184106 | 0.66 | 0.976231 |
Target: 5'- cGGCGGGUGCagUUCGcCcACGGGGg -3' miRNA: 3'- cUCGUCCACGcaAAGCuGcUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 189893 | 0.66 | 0.976231 |
Target: 5'- cGGCGGcG-GCGaggaCGGCGGCGAGGa -3' miRNA: 3'- cUCGUC-CaCGCaaa-GCUGCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 223095 | 0.66 | 0.976231 |
Target: 5'- -cGCGGcUGCG--UCGACGGgGAGGg -3' miRNA: 3'- cuCGUCcACGCaaAGCUGCUgCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 221392 | 0.66 | 0.978569 |
Target: 5'- cGGGCGGGgcgcggGCGgggaGGCGGCG-GGUc -3' miRNA: 3'- -CUCGUCCa-----CGCaaagCUGCUGCuCCA- -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 82960 | 0.66 | 0.980733 |
Target: 5'- cAGCAGGUcGCGg--CGcACGGCGcGGa -3' miRNA: 3'- cUCGUCCA-CGCaaaGC-UGCUGCuCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 105769 | 0.66 | 0.978569 |
Target: 5'- -cGCGGauaaccuggGCGUcgcauggUCGACGGCGAGGg -3' miRNA: 3'- cuCGUCca-------CGCAa------AGCUGCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 42875 | 0.66 | 0.980733 |
Target: 5'- cGAGCGGaUGCc---CGACGGCGuGGUg -3' miRNA: 3'- -CUCGUCcACGcaaaGCUGCUGCuCCA- -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 199816 | 0.66 | 0.980733 |
Target: 5'- -cGCGGGgGCGgaUCGG-GugGAGGg -3' miRNA: 3'- cuCGUCCaCGCaaAGCUgCugCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 209171 | 0.66 | 0.980733 |
Target: 5'- cGGCAcGGcGCGcaagauccUCGugGACGAGGa -3' miRNA: 3'- cUCGU-CCaCGCaa------AGCugCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 42572 | 0.66 | 0.980733 |
Target: 5'- cGGGCGGGcgccGCGaggCGAgCGGCGGGGc -3' miRNA: 3'- -CUCGUCCa---CGCaaaGCU-GCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 16892 | 0.66 | 0.980733 |
Target: 5'- cGGGCccgacGGccGCGg--CGACGAUGAGGUc -3' miRNA: 3'- -CUCGu----CCa-CGCaaaGCUGCUGCUCCA- -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 19779 | 0.66 | 0.978343 |
Target: 5'- aGGGCAGG-GCGUacUCGACGuCGcacuugaAGGUc -3' miRNA: 3'- -CUCGUCCaCGCAa-AGCUGCuGC-------UCCA- -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 35260 | 0.66 | 0.978116 |
Target: 5'- cGGGCAGGUcccccGCGgcgacggccgCGGCGGCgGAGGc -3' miRNA: 3'- -CUCGUCCA-----CGCaaa-------GCUGCUG-CUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 95281 | 0.66 | 0.978569 |
Target: 5'- cGGCGGGgucGgGUUcccgUCGGCGgACGAGGc -3' miRNA: 3'- cUCGUCCa--CgCAA----AGCUGC-UGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 46712 | 0.66 | 0.977655 |
Target: 5'- aAGCuGGUgGCGUacgucauggcggCGGCGGCGGGGa -3' miRNA: 3'- cUCGuCCA-CGCAaa----------GCUGCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 129857 | 0.66 | 0.976231 |
Target: 5'- aGGCGGaG-GCGgaggaCGGCGGCGGGGg -3' miRNA: 3'- cUCGUC-CaCGCaaa--GCUGCUGCUCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 5201 | 0.66 | 0.97371 |
Target: 5'- cGGGCAGGaccGCGggccagcCGACGGCGGcGGg -3' miRNA: 3'- -CUCGUCCa--CGCaaa----GCUGCUGCU-CCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 43028 | 0.66 | 0.971001 |
Target: 5'- uGGGCAGGUcgagGCGcagguccUCGGCGACGcgcAGGg -3' miRNA: 3'- -CUCGUCCA----CGCaa-----AGCUGCUGC---UCCa -5' |
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8965 | 5' | -54.6 | NC_002512.2 | + | 227275 | 0.66 | 0.971001 |
Target: 5'- uGGCAGG-GCGgg-CGAaCGauGCGAGGUu -3' miRNA: 3'- cUCGUCCaCGCaaaGCU-GC--UGCUCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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