miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 5' -59.6 NC_002512.2 + 119827 0.66 0.826243
Target:  5'- uUGAuguuGCaGGCgauGCGCACCGCCGCc-- -3'
miRNA:   3'- uACU----UG-CCGac-CGUGUGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 121142 0.66 0.826243
Target:  5'- --cGACGGC-GGCcgagACGCCGgCCGCGg- -3'
miRNA:   3'- uacUUGCCGaCCG----UGUGGC-GGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 123150 0.66 0.792184
Target:  5'- -gGGGCGGC-GGCGCcgcgAUCGCCGCc-- -3'
miRNA:   3'- uaCUUGCCGaCCGUG----UGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 123408 0.66 0.809516
Target:  5'- -cGGACGGCgaGGCGgucgagguccCGCCGCC-CGUg -3'
miRNA:   3'- uaCUUGCCGa-CCGU----------GUGGCGGcGCAa -5'
8966 5' -59.6 NC_002512.2 + 123924 0.71 0.522045
Target:  5'- gGUGGACGGCgGGCugGCCGUCagacucgugccgGCGg- -3'
miRNA:   3'- -UACUUGCCGaCCGugUGGCGG------------CGCaa -5'
8966 5' -59.6 NC_002512.2 + 126179 0.66 0.817959
Target:  5'- -gGAucAUGGC-GGCGCccccucCCGCCGCGUc -3'
miRNA:   3'- uaCU--UGCCGaCCGUGu-----GGCGGCGCAa -5'
8966 5' -59.6 NC_002512.2 + 133243 0.67 0.755957
Target:  5'- -aGGGCGGC-GGCGCcCCGgUCGCGg- -3'
miRNA:   3'- uaCUUGCCGaCCGUGuGGC-GGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 133657 0.67 0.746623
Target:  5'- -gGGGCGGUcgccGC-CGCCGCCGCGg- -3'
miRNA:   3'- uaCUUGCCGac--CGuGUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 137208 0.67 0.737194
Target:  5'- -cGGugGGC-GGCGCGCCcGgCGCGg- -3'
miRNA:   3'- uaCUugCCGaCCGUGUGG-CgGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 137966 0.66 0.817959
Target:  5'- -aGu-CGGCcgccgacGGCGCGCCGCCGCc-- -3'
miRNA:   3'- uaCuuGCCGa------CCGUGUGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 138547 0.73 0.388953
Target:  5'- -cGAGCaGCUGGCaggagcggaGCGCCGCCGUGa- -3'
miRNA:   3'- uaCUUGcCGACCG---------UGUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 148131 0.68 0.67911
Target:  5'- aGUGAGCGuucuCUaGCGCGCCGCgGCGUg -3'
miRNA:   3'- -UACUUGCc---GAcCGUGUGGCGgCGCAa -5'
8966 5' -59.6 NC_002512.2 + 148833 0.74 0.357379
Target:  5'- -gGGGCGGUccgGGCGCACCGCUGCc-- -3'
miRNA:   3'- uaCUUGCCGa--CCGUGUGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 148995 0.68 0.688929
Target:  5'- cUGAAccacCGGCcGGgGgGCCGCCGCGg- -3'
miRNA:   3'- uACUU----GCCGaCCgUgUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 149238 0.69 0.659371
Target:  5'- --cGACGGacccGGCGcCGCCGCCGCGg- -3'
miRNA:   3'- uacUUGCCga--CCGU-GUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 150536 0.75 0.320507
Target:  5'- --cGGCGGCcgcgagGGUACGCCGCCGCGa- -3'
miRNA:   3'- uacUUGCCGa-----CCGUGUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 153279 0.66 0.809516
Target:  5'- cUGGuCGGCUGGCu--CCGCUGgGUc -3'
miRNA:   3'- uACUuGCCGACCGuguGGCGGCgCAa -5'
8966 5' -59.6 NC_002512.2 + 153372 0.66 0.809516
Target:  5'- cUGGgcgGCGGCUGGCGguCCGgaGCGa- -3'
miRNA:   3'- uACU---UGCCGACCGUguGGCggCGCaa -5'
8966 5' -59.6 NC_002512.2 + 154595 0.67 0.774309
Target:  5'- --cGACGGC-GGCAucguCGCCGCCGCc-- -3'
miRNA:   3'- uacUUGCCGaCCGU----GUGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 154726 0.67 0.737194
Target:  5'- -gGAACGGCguuGCGucCGCgGCCGCGUc -3'
miRNA:   3'- uaCUUGCCGac-CGU--GUGgCGGCGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.