miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 5' -59.6 NC_002512.2 + 80697 0.66 0.812912
Target:  5'- -cGAGCGGCguccggggggcgagGGCGCGCgGgcCCGCGg- -3'
miRNA:   3'- uaCUUGCCGa-------------CCGUGUGgC--GGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 90632 0.69 0.609795
Target:  5'- -cGGGCGGCgcgacccGGCGcCGCgGCCGCGg- -3'
miRNA:   3'- uaCUUGCCGa------CCGU-GUGgCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 90905 0.7 0.5606
Target:  5'- -gGGACGGCcGGaCugGCgGCCGCGa- -3'
miRNA:   3'- uaCUUGCCGaCC-GugUGgCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 90927 0.68 0.688929
Target:  5'- -nGAACggGGCcGGCGCgGCCGCCGcCGUc -3'
miRNA:   3'- uaCUUG--CCGaCCGUG-UGGCGGC-GCAa -5'
8966 5' -59.6 NC_002512.2 + 91888 0.67 0.746623
Target:  5'- -cGGGCGGCggcgcGGCGCACgGcCCGCu-- -3'
miRNA:   3'- uaCUUGCCGa----CCGUGUGgC-GGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 91914 0.74 0.372939
Target:  5'- -gGGGCGGC-GGCGCGCCGUCgGCGg- -3'
miRNA:   3'- uaCUUGCCGaCCGUGUGGCGG-CGCaa -5'
8966 5' -59.6 NC_002512.2 + 92668 0.69 0.649467
Target:  5'- -gGGACGGCcgcccgcgccgGGCGCGCCGCCcaccggGCGg- -3'
miRNA:   3'- uaCUUGCCGa----------CCGUGUGGCGG------CGCaa -5'
8966 5' -59.6 NC_002512.2 + 94405 0.69 0.619706
Target:  5'- -aGGACGGCggucuUGGCGCuccaguCgGCCGCGUc -3'
miRNA:   3'- uaCUUGCCG-----ACCGUGu-----GgCGGCGCAa -5'
8966 5' -59.6 NC_002512.2 + 96287 0.69 0.619706
Target:  5'- -gGGGgGGCUgccgcgGGC-CGCCGCCGCGg- -3'
miRNA:   3'- uaCUUgCCGA------CCGuGUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 100203 0.66 0.792184
Target:  5'- -cGGACGGCgauucgGGCuACGCCGUCgagGCGg- -3'
miRNA:   3'- uaCUUGCCGa-----CCG-UGUGGCGG---CGCaa -5'
8966 5' -59.6 NC_002512.2 + 103101 0.67 0.737194
Target:  5'- -gGGACgGGCgcGGCACgcgucgccgccGCCGCCGCGc- -3'
miRNA:   3'- uaCUUG-CCGa-CCGUG-----------UGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 105999 0.7 0.58018
Target:  5'- gGUGAacuugACGGCgaacgGGCgGCGCCGCCGgGg- -3'
miRNA:   3'- -UACU-----UGCCGa----CCG-UGUGGCGGCgCaa -5'
8966 5' -59.6 NC_002512.2 + 110285 0.69 0.629627
Target:  5'- -cGAGCGGCgagGGCgACACUGCuggCGCGa- -3'
miRNA:   3'- uaCUUGCCGa--CCG-UGUGGCG---GCGCaa -5'
8966 5' -59.6 NC_002512.2 + 111233 0.67 0.765189
Target:  5'- -cGGGCGGCcgGGCGC-CCGgaGCGUc -3'
miRNA:   3'- uaCUUGCCGa-CCGUGuGGCggCGCAa -5'
8966 5' -59.6 NC_002512.2 + 113270 0.67 0.72768
Target:  5'- -gGGGCGGCcGGCGgggcaGCCGCgGCGg- -3'
miRNA:   3'- uaCUUGCCGaCCGUg----UGGCGgCGCaa -5'
8966 5' -59.6 NC_002512.2 + 115464 0.68 0.67911
Target:  5'- -cGAAcCGGCUGGCGCAgaGCuCGCa-- -3'
miRNA:   3'- uaCUU-GCCGACCGUGUggCG-GCGcaa -5'
8966 5' -59.6 NC_002512.2 + 116601 0.68 0.718087
Target:  5'- -aGGGCGGgaGGCcCGCCGCgGCu-- -3'
miRNA:   3'- uaCUUGCCgaCCGuGUGGCGgCGcaa -5'
8966 5' -59.6 NC_002512.2 + 117137 0.66 0.783311
Target:  5'- -gGGACGGCcGGCucucCGCCuuCCGCGUg -3'
miRNA:   3'- uaCUUGCCGaCCGu---GUGGc-GGCGCAa -5'
8966 5' -59.6 NC_002512.2 + 117694 0.68 0.698704
Target:  5'- -cGAGCuGCgUGGCGCACCuGCgGCGg- -3'
miRNA:   3'- uaCUUGcCG-ACCGUGUGG-CGgCGCaa -5'
8966 5' -59.6 NC_002512.2 + 118335 0.66 0.809516
Target:  5'- -cGGACGcGCUGGUggaGCGCCccuGCCGCu-- -3'
miRNA:   3'- uaCUUGC-CGACCG---UGUGG---CGGCGcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.