miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 5' -59.6 NC_002512.2 + 4581 0.66 0.792184
Target:  5'- -gGGGCGGCggaGGagGCGgCGCCGCGg- -3'
miRNA:   3'- uaCUUGCCGa--CCg-UGUgGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 4893 0.71 0.50315
Target:  5'- -gGAGCGGCgacgggaagagGGCGcCGCCGCCGCc-- -3'
miRNA:   3'- uaCUUGCCGa----------CCGU-GUGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 7383 0.66 0.826243
Target:  5'- -cGGGCGGCcaGGCGCagaaggcggccACCGCCaCGUUg -3'
miRNA:   3'- uaCUUGCCGa-CCGUG-----------UGGCGGcGCAA- -5'
8966 5' -59.6 NC_002512.2 + 27974 0.67 0.765189
Target:  5'- gAUGGGCGGCcgGGCGagauuCCGgCGCGg- -3'
miRNA:   3'- -UACUUGCCGa-CCGUgu---GGCgGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 29017 0.68 0.702599
Target:  5'- gGUGGGCGGCgUGGUcgACGCCaugcggcagagacgcGCCGCGc- -3'
miRNA:   3'- -UACUUGCCG-ACCG--UGUGG---------------CGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 31657 0.69 0.619706
Target:  5'- -cGGACGGCgcgGGCGCGgCCGUgGUGg- -3'
miRNA:   3'- uaCUUGCCGa--CCGUGU-GGCGgCGCaa -5'
8966 5' -59.6 NC_002512.2 + 37195 0.66 0.809516
Target:  5'- --aGACGGCcucGGCGCGCCGCCa---- -3'
miRNA:   3'- uacUUGCCGa--CCGUGUGGCGGcgcaa -5'
8966 5' -59.6 NC_002512.2 + 45423 0.67 0.765189
Target:  5'- --cGACGGC-GGCGC-CgGCCGCGg- -3'
miRNA:   3'- uacUUGCCGaCCGUGuGgCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 49211 0.68 0.709395
Target:  5'- -cGGGCGGCgugugagaucuucggGGC-CACCGCgGCGg- -3'
miRNA:   3'- uaCUUGCCGa--------------CCGuGUGGCGgCGCaa -5'
8966 5' -59.6 NC_002512.2 + 52757 0.66 0.800922
Target:  5'- -aGAACGcgcgggcccuGCUGGCGCACCcggaccuccugGUCGCGg- -3'
miRNA:   3'- uaCUUGC----------CGACCGUGUGG-----------CGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 56157 0.66 0.792184
Target:  5'- gAUGAugGGgUGGUugccgaGCACgGUCGCGg- -3'
miRNA:   3'- -UACUugCCgACCG------UGUGgCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 57072 0.7 0.599898
Target:  5'- -cGAACGGUaGGCGCACCGCaaGCu-- -3'
miRNA:   3'- uaCUUGCCGaCCGUGUGGCGg-CGcaa -5'
8966 5' -59.6 NC_002512.2 + 58206 0.66 0.817959
Target:  5'- aGUGGgcGCGGC-GcGCACcCCGCgCGCGUa -3'
miRNA:   3'- -UACU--UGCCGaC-CGUGuGGCG-GCGCAa -5'
8966 5' -59.6 NC_002512.2 + 62455 0.69 0.619706
Target:  5'- -cGAACGcGCaGGCGUGCCGCCGCa-- -3'
miRNA:   3'- uaCUUGC-CGaCCGUGUGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 68904 0.7 0.550878
Target:  5'- -gGGGCGGUcgUGcuGCugGCCGCCGCGg- -3'
miRNA:   3'- uaCUUGCCG--AC--CGugUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 69083 0.78 0.206623
Target:  5'- -gGGGCGGCUGGUACuGCUGCCGUGg- -3'
miRNA:   3'- uaCUUGCCGACCGUG-UGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 69874 0.66 0.800922
Target:  5'- -cGAACGGCccUGGUucgGCACCGCCa---- -3'
miRNA:   3'- uaCUUGCCG--ACCG---UGUGGCGGcgcaa -5'
8966 5' -59.6 NC_002512.2 + 71011 0.66 0.783311
Target:  5'- -aGGACGGggGGC-CGCCGCCGg--- -3'
miRNA:   3'- uaCUUGCCgaCCGuGUGGCGGCgcaa -5'
8966 5' -59.6 NC_002512.2 + 71379 0.66 0.792184
Target:  5'- -gGAGC-GCUGGCGCAg-GCCGCGg- -3'
miRNA:   3'- uaCUUGcCGACCGUGUggCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 74618 0.66 0.817959
Target:  5'- -gGAGCGGa--GCGCgagACCGCCGCGc- -3'
miRNA:   3'- uaCUUGCCgacCGUG---UGGCGGCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.