miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 5' -59.6 NC_002512.2 + 227672 0.67 0.746623
Target:  5'- -cGAagcGCGGCUGGCGa--CGCUGCGc- -3'
miRNA:   3'- uaCU---UGCCGACCGUgugGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 227671 0.66 0.783311
Target:  5'- -aGAGCGGC-GGC--GCCGCCgGCGa- -3'
miRNA:   3'- uaCUUGCCGaCCGugUGGCGG-CGCaa -5'
8966 5' -59.6 NC_002512.2 + 227192 0.73 0.413802
Target:  5'- -gGAGCGGCaGGCGCucCCGCgCGCGg- -3'
miRNA:   3'- uaCUUGCCGaCCGUGu-GGCG-GCGCaa -5'
8966 5' -59.6 NC_002512.2 + 226799 0.67 0.746623
Target:  5'- cGUGGucuCGGCcgccgccgUGGCcgccgcCGCCGCCGCGUc -3'
miRNA:   3'- -UACUu--GCCG--------ACCGu-----GUGGCGGCGCAa -5'
8966 5' -59.6 NC_002512.2 + 224619 0.66 0.783311
Target:  5'- -cGAcCgGGCUcgGGguCGCCGCCGCGg- -3'
miRNA:   3'- uaCUuG-CCGA--CCguGUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 221760 0.67 0.737194
Target:  5'- -cGAACGGCagcugGGCG-GCCGUCGUGUc -3'
miRNA:   3'- uaCUUGCCGa----CCGUgUGGCGGCGCAa -5'
8966 5' -59.6 NC_002512.2 + 220607 0.67 0.737194
Target:  5'- cGUGcGCGaGCUGGUGCugUGCCGgGa- -3'
miRNA:   3'- -UACuUGC-CGACCGUGugGCGGCgCaa -5'
8966 5' -59.6 NC_002512.2 + 220343 0.66 0.782416
Target:  5'- -cGGACGGCcucgucaacgccgUGGCcguggcCGCCGCCGcCGUg -3'
miRNA:   3'- uaCUUGCCG-------------ACCGu-----GUGGCGGC-GCAa -5'
8966 5' -59.6 NC_002512.2 + 220133 0.66 0.826243
Target:  5'- -gGGGCGGCgGGUccgGCuCCGCCGCc-- -3'
miRNA:   3'- uaCUUGCCGaCCG---UGuGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 214234 0.66 0.792184
Target:  5'- --aGGCGGCUcgucGGCuCGCCGCcCGCGg- -3'
miRNA:   3'- uacUUGCCGA----CCGuGUGGCG-GCGCaa -5'
8966 5' -59.6 NC_002512.2 + 212441 0.68 0.67911
Target:  5'- -cGGGcCGGCcGGcCGCgACCGCCGCGa- -3'
miRNA:   3'- uaCUU-GCCGaCC-GUG-UGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 212359 0.66 0.817959
Target:  5'- -aGAGCGaGCUGGCcgccuACGCCgacGCCGaCGUc -3'
miRNA:   3'- uaCUUGC-CGACCG-----UGUGG---CGGC-GCAa -5'
8966 5' -59.6 NC_002512.2 + 212054 0.69 0.609795
Target:  5'- -gGAGCuGCUGGCGCAcacccugggcauCCGCCGCc-- -3'
miRNA:   3'- uaCUUGcCGACCGUGU------------GGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 210915 0.66 0.809516
Target:  5'- ----cCGGCUcuccGGCAuCAUCGCCGCGa- -3'
miRNA:   3'- uacuuGCCGA----CCGU-GUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 207395 0.66 0.823775
Target:  5'- gAUGGACGGCUGcuGCGCGCUcauguccauggccuGCUGCa-- -3'
miRNA:   3'- -UACUUGCCGAC--CGUGUGG--------------CGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 206930 1.04 0.003828
Target:  5'- gAUGAACGGCUGGCACACCGCCGCGUUg -3'
miRNA:   3'- -UACUUGCCGACCGUGUGGCGGCGCAA- -5'
8966 5' -59.6 NC_002512.2 + 202129 0.68 0.718087
Target:  5'- gGUGGcgcCGGuCUcGGC-CGCCGCCGCGg- -3'
miRNA:   3'- -UACUu--GCC-GA-CCGuGUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 201743 0.67 0.774309
Target:  5'- --cGACGGCUGGgGCGCCGaucCCGgGg- -3'
miRNA:   3'- uacUUGCCGACCgUGUGGC---GGCgCaa -5'
8966 5' -59.6 NC_002512.2 + 190949 0.69 0.609795
Target:  5'- -cGGGCGcacGCgGGCGC-CCGCCGCGg- -3'
miRNA:   3'- uaCUUGC---CGaCCGUGuGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 186201 0.66 0.783311
Target:  5'- cUGGAgGGCUcgGGCGCcgaugaCGCCGCGg- -3'
miRNA:   3'- uACUUgCCGA--CCGUGug----GCGGCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.