miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 5' -59.6 NC_002512.2 + 221760 0.67 0.737194
Target:  5'- -cGAACGGCagcugGGCG-GCCGUCGUGUc -3'
miRNA:   3'- uaCUUGCCGa----CCGUgUGGCGGCGCAa -5'
8966 5' -59.6 NC_002512.2 + 111233 0.67 0.765189
Target:  5'- -cGGGCGGCcgGGCGC-CCGgaGCGUc -3'
miRNA:   3'- uaCUUGCCGa-CCGUGuGGCggCGCAa -5'
8966 5' -59.6 NC_002512.2 + 118335 0.66 0.809516
Target:  5'- -cGGACGcGCUGGUggaGCGCCccuGCCGCu-- -3'
miRNA:   3'- uaCUUGC-CGACCG---UGUGG---CGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 207395 0.66 0.823775
Target:  5'- gAUGGACGGCUGcuGCGCGCUcauguccauggccuGCUGCa-- -3'
miRNA:   3'- -UACUUGCCGAC--CGUGUGG--------------CGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 94405 0.69 0.619706
Target:  5'- -aGGACGGCggucuUGGCGCuccaguCgGCCGCGUc -3'
miRNA:   3'- uaCUUGCCG-----ACCGUGu-----GgCGGCGCAa -5'
8966 5' -59.6 NC_002512.2 + 117694 0.68 0.698704
Target:  5'- -cGAGCuGCgUGGCGCACCuGCgGCGg- -3'
miRNA:   3'- uaCUUGcCG-ACCGUGUGG-CGgCGCaa -5'
8966 5' -59.6 NC_002512.2 + 201743 0.67 0.774309
Target:  5'- --cGACGGCUGGgGCGCCGaucCCGgGg- -3'
miRNA:   3'- uacUUGCCGACCgUGUGGC---GGCgCaa -5'
8966 5' -59.6 NC_002512.2 + 220133 0.66 0.826243
Target:  5'- -gGGGCGGCgGGUccgGCuCCGCCGCc-- -3'
miRNA:   3'- uaCUUGCCGaCCG---UGuGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 202129 0.68 0.718087
Target:  5'- gGUGGcgcCGGuCUcGGC-CGCCGCCGCGg- -3'
miRNA:   3'- -UACUu--GCC-GA-CCGuGUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 167082 0.66 0.826243
Target:  5'- -cGAcauGCuGCUGGC-CACCuCCGCGUa -3'
miRNA:   3'- uaCU---UGcCGACCGuGUGGcGGCGCAa -5'
8966 5' -59.6 NC_002512.2 + 179312 0.67 0.773403
Target:  5'- -cGGGCGGCgaggcgGGCagauccuGCAgCGCCGCGc- -3'
miRNA:   3'- uaCUUGCCGa-----CCG-------UGUgGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 220607 0.67 0.737194
Target:  5'- cGUGcGCGaGCUGGUGCugUGCCGgGa- -3'
miRNA:   3'- -UACuUGC-CGACCGUGugGCGGCgCaa -5'
8966 5' -59.6 NC_002512.2 + 186201 0.66 0.783311
Target:  5'- cUGGAgGGCUcgGGCGCcgaugaCGCCGCGg- -3'
miRNA:   3'- uACUUgCCGA--CCGUGug----GCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 214234 0.66 0.792184
Target:  5'- --aGGCGGCUcgucGGCuCGCCGCcCGCGg- -3'
miRNA:   3'- uacUUGCCGA----CCGuGUGGCG-GCGCaa -5'
8966 5' -59.6 NC_002512.2 + 210915 0.66 0.809516
Target:  5'- ----cCGGCUcuccGGCAuCAUCGCCGCGa- -3'
miRNA:   3'- uacuuGCCGA----CCGU-GUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 137966 0.66 0.817959
Target:  5'- -aGu-CGGCcgccgacGGCGCGCCGCCGCc-- -3'
miRNA:   3'- uaCuuGCCGa------CCGUGUGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 227192 0.73 0.413802
Target:  5'- -gGAGCGGCaGGCGCucCCGCgCGCGg- -3'
miRNA:   3'- uaCUUGCCGaCCGUGu-GGCG-GCGCaa -5'
8966 5' -59.6 NC_002512.2 + 190949 0.69 0.609795
Target:  5'- -cGGGCGcacGCgGGCGC-CCGCCGCGg- -3'
miRNA:   3'- uaCUUGC---CGaCCGUGuGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 149238 0.69 0.659371
Target:  5'- --cGACGGacccGGCGcCGCCGCCGCGg- -3'
miRNA:   3'- uacUUGCCga--CCGU-GUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 148995 0.68 0.688929
Target:  5'- cUGAAccacCGGCcGGgGgGCCGCCGCGg- -3'
miRNA:   3'- uACUU----GCCGaCCgUgUGGCGGCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.