miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 5' -59.6 NC_002512.2 + 206930 1.04 0.003828
Target:  5'- gAUGAACGGCUGGCACACCGCCGCGUUg -3'
miRNA:   3'- -UACUUGCCGACCGUGUGGCGGCGCAA- -5'
8966 5' -59.6 NC_002512.2 + 69083 0.78 0.206623
Target:  5'- -gGGGCGGCUGGUACuGCUGCCGUGg- -3'
miRNA:   3'- uaCUUGCCGACCGUG-UGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 150536 0.75 0.320507
Target:  5'- --cGGCGGCcgcgagGGUACGCCGCCGCGa- -3'
miRNA:   3'- uacUUGCCGa-----CCGUGUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 91914 0.74 0.372939
Target:  5'- -gGGGCGGC-GGCGCGCCGUCgGCGg- -3'
miRNA:   3'- uaCUUGCCGaCCGUGUGGCGG-CGCaa -5'
8966 5' -59.6 NC_002512.2 + 148833 0.74 0.357379
Target:  5'- -gGGGCGGUccgGGCGCACCGCUGCc-- -3'
miRNA:   3'- uaCUUGCCGa--CCGUGUGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 227192 0.73 0.413802
Target:  5'- -gGAGCGGCaGGCGCucCCGCgCGCGg- -3'
miRNA:   3'- uaCUUGCCGaCCGUGu-GGCG-GCGCaa -5'
8966 5' -59.6 NC_002512.2 + 138547 0.73 0.388953
Target:  5'- -cGAGCaGCUGGCaggagcggaGCGCCGCCGUGa- -3'
miRNA:   3'- uaCUUGcCGACCG---------UGUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 123924 0.71 0.522045
Target:  5'- gGUGGACGGCgGGCugGCCGUCagacucgugccgGCGg- -3'
miRNA:   3'- -UACUUGCCGaCCGugUGGCGG------------CGCaa -5'
8966 5' -59.6 NC_002512.2 + 4893 0.71 0.50315
Target:  5'- -gGAGCGGCgacgggaagagGGCGcCGCCGCCGCc-- -3'
miRNA:   3'- uaCUUGCCGa----------CCGU-GUGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 68904 0.7 0.550878
Target:  5'- -gGGGCGGUcgUGcuGCugGCCGCCGCGg- -3'
miRNA:   3'- uaCUUGCCG--AC--CGugUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 90905 0.7 0.5606
Target:  5'- -gGGACGGCcGGaCugGCgGCCGCGa- -3'
miRNA:   3'- uaCUUGCCGaCC-GugUGgCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 105999 0.7 0.58018
Target:  5'- gGUGAacuugACGGCgaacgGGCgGCGCCGCCGgGg- -3'
miRNA:   3'- -UACU-----UGCCGa----CCG-UGUGGCGGCgCaa -5'
8966 5' -59.6 NC_002512.2 + 57072 0.7 0.599898
Target:  5'- -cGAACGGUaGGCGCACCGCaaGCu-- -3'
miRNA:   3'- uaCUUGCCGaCCGUGUGGCGg-CGcaa -5'
8966 5' -59.6 NC_002512.2 + 31657 0.69 0.619706
Target:  5'- -cGGACGGCgcgGGCGCGgCCGUgGUGg- -3'
miRNA:   3'- uaCUUGCCGa--CCGUGU-GGCGgCGCaa -5'
8966 5' -59.6 NC_002512.2 + 96287 0.69 0.619706
Target:  5'- -gGGGgGGCUgccgcgGGC-CGCCGCCGCGg- -3'
miRNA:   3'- uaCUUgCCGA------CCGuGUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 110285 0.69 0.629627
Target:  5'- -cGAGCGGCgagGGCgACACUGCuggCGCGa- -3'
miRNA:   3'- uaCUUGCCGa--CCG-UGUGGCG---GCGCaa -5'
8966 5' -59.6 NC_002512.2 + 190949 0.69 0.609795
Target:  5'- -cGGGCGcacGCgGGCGC-CCGCCGCGg- -3'
miRNA:   3'- uaCUUGC---CGaCCGUGuGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 94405 0.69 0.619706
Target:  5'- -aGGACGGCggucuUGGCGCuccaguCgGCCGCGUc -3'
miRNA:   3'- uaCUUGCCG-----ACCGUGu-----GgCGGCGCAa -5'
8966 5' -59.6 NC_002512.2 + 212054 0.69 0.609795
Target:  5'- -gGAGCuGCUGGCGCAcacccugggcauCCGCCGCc-- -3'
miRNA:   3'- uaCUUGcCGACCGUGU------------GGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 149238 0.69 0.659371
Target:  5'- --cGACGGacccGGCGcCGCCGCCGCGg- -3'
miRNA:   3'- uacUUGCCga--CCGU-GUGGCGGCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.