Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8966 | 5' | -59.6 | NC_002512.2 | + | 133243 | 0.67 | 0.755957 |
Target: 5'- -aGGGCGGC-GGCGCcCCGgUCGCGg- -3' miRNA: 3'- uaCUUGCCGaCCGUGuGGC-GGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 133657 | 0.67 | 0.746623 |
Target: 5'- -gGGGCGGUcgccGC-CGCCGCCGCGg- -3' miRNA: 3'- uaCUUGCCGac--CGuGUGGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 226799 | 0.67 | 0.746623 |
Target: 5'- cGUGGucuCGGCcgccgccgUGGCcgccgcCGCCGCCGCGUc -3' miRNA: 3'- -UACUu--GCCG--------ACCGu-----GUGGCGGCGCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 227672 | 0.67 | 0.746623 |
Target: 5'- -cGAagcGCGGCUGGCGa--CGCUGCGc- -3' miRNA: 3'- uaCU---UGCCGACCGUgugGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 91888 | 0.67 | 0.746623 |
Target: 5'- -cGGGCGGCggcgcGGCGCACgGcCCGCu-- -3' miRNA: 3'- uaCUUGCCGa----CCGUGUGgC-GGCGcaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 221760 | 0.67 | 0.737194 |
Target: 5'- -cGAACGGCagcugGGCG-GCCGUCGUGUc -3' miRNA: 3'- uaCUUGCCGa----CCGUgUGGCGGCGCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 103101 | 0.67 | 0.737194 |
Target: 5'- -gGGACgGGCgcGGCACgcgucgccgccGCCGCCGCGc- -3' miRNA: 3'- uaCUUG-CCGa-CCGUG-----------UGGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 220607 | 0.67 | 0.737194 |
Target: 5'- cGUGcGCGaGCUGGUGCugUGCCGgGa- -3' miRNA: 3'- -UACuUGC-CGACCGUGugGCGGCgCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 154726 | 0.67 | 0.737194 |
Target: 5'- -gGAACGGCguuGCGucCGCgGCCGCGUc -3' miRNA: 3'- uaCUUGCCGac-CGU--GUGgCGGCGCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 137208 | 0.67 | 0.737194 |
Target: 5'- -cGGugGGC-GGCGCGCCcGgCGCGg- -3' miRNA: 3'- uaCUugCCGaCCGUGUGG-CgGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 113270 | 0.67 | 0.72768 |
Target: 5'- -gGGGCGGCcGGCGgggcaGCCGCgGCGg- -3' miRNA: 3'- uaCUUGCCGaCCGUg----UGGCGgCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 202129 | 0.68 | 0.718087 |
Target: 5'- gGUGGcgcCGGuCUcGGC-CGCCGCCGCGg- -3' miRNA: 3'- -UACUu--GCC-GA-CCGuGUGGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 116601 | 0.68 | 0.718087 |
Target: 5'- -aGGGCGGgaGGCcCGCCGCgGCu-- -3' miRNA: 3'- uaCUUGCCgaCCGuGUGGCGgCGcaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 49211 | 0.68 | 0.709395 |
Target: 5'- -cGGGCGGCgugugagaucuucggGGC-CACCGCgGCGg- -3' miRNA: 3'- uaCUUGCCGa--------------CCGuGUGGCGgCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 29017 | 0.68 | 0.702599 |
Target: 5'- gGUGGGCGGCgUGGUcgACGCCaugcggcagagacgcGCCGCGc- -3' miRNA: 3'- -UACUUGCCG-ACCG--UGUGG---------------CGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 117694 | 0.68 | 0.698704 |
Target: 5'- -cGAGCuGCgUGGCGCACCuGCgGCGg- -3' miRNA: 3'- uaCUUGcCG-ACCGUGUGG-CGgCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 90927 | 0.68 | 0.688929 |
Target: 5'- -nGAACggGGCcGGCGCgGCCGCCGcCGUc -3' miRNA: 3'- uaCUUG--CCGaCCGUG-UGGCGGC-GCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 148995 | 0.68 | 0.688929 |
Target: 5'- cUGAAccacCGGCcGGgGgGCCGCCGCGg- -3' miRNA: 3'- uACUU----GCCGaCCgUgUGGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 148131 | 0.68 | 0.67911 |
Target: 5'- aGUGAGCGuucuCUaGCGCGCCGCgGCGUg -3' miRNA: 3'- -UACUUGCc---GAcCGUGUGGCGgCGCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 212441 | 0.68 | 0.67911 |
Target: 5'- -cGGGcCGGCcGGcCGCgACCGCCGCGa- -3' miRNA: 3'- uaCUU-GCCGaCC-GUG-UGGCGGCGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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