miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 5' -59.6 NC_002512.2 + 69874 0.66 0.800922
Target:  5'- -cGAACGGCccUGGUucgGCACCGCCa---- -3'
miRNA:   3'- uaCUUGCCG--ACCG---UGUGGCGGcgcaa -5'
8966 5' -59.6 NC_002512.2 + 71379 0.66 0.792184
Target:  5'- -gGAGC-GCUGGCGCAg-GCCGCGg- -3'
miRNA:   3'- uaCUUGcCGACCGUGUggCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 214234 0.66 0.792184
Target:  5'- --aGGCGGCUcgucGGCuCGCCGCcCGCGg- -3'
miRNA:   3'- uacUUGCCGA----CCGuGUGGCG-GCGCaa -5'
8966 5' -59.6 NC_002512.2 + 100203 0.66 0.792184
Target:  5'- -cGGACGGCgauucgGGCuACGCCGUCgagGCGg- -3'
miRNA:   3'- uaCUUGCCGa-----CCG-UGUGGCGG---CGCaa -5'
8966 5' -59.6 NC_002512.2 + 123150 0.66 0.792184
Target:  5'- -gGGGCGGC-GGCGCcgcgAUCGCCGCc-- -3'
miRNA:   3'- uaCUUGCCGaCCGUG----UGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 4581 0.66 0.792184
Target:  5'- -gGGGCGGCggaGGagGCGgCGCCGCGg- -3'
miRNA:   3'- uaCUUGCCGa--CCg-UGUgGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 56157 0.66 0.792184
Target:  5'- gAUGAugGGgUGGUugccgaGCACgGUCGCGg- -3'
miRNA:   3'- -UACUugCCgACCG------UGUGgCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 117137 0.66 0.783311
Target:  5'- -gGGACGGCcGGCucucCGCCuuCCGCGUg -3'
miRNA:   3'- uaCUUGCCGaCCGu---GUGGc-GGCGCAa -5'
8966 5' -59.6 NC_002512.2 + 186201 0.66 0.783311
Target:  5'- cUGGAgGGCUcgGGCGCcgaugaCGCCGCGg- -3'
miRNA:   3'- uACUUgCCGA--CCGUGug----GCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 227671 0.66 0.783311
Target:  5'- -aGAGCGGC-GGC--GCCGCCgGCGa- -3'
miRNA:   3'- uaCUUGCCGaCCGugUGGCGG-CGCaa -5'
8966 5' -59.6 NC_002512.2 + 224619 0.66 0.783311
Target:  5'- -cGAcCgGGCUcgGGguCGCCGCCGCGg- -3'
miRNA:   3'- uaCUuG-CCGA--CCguGUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 170047 0.66 0.783311
Target:  5'- ---cAUGGCcaUGGCcgcCGCCGCCGCGg- -3'
miRNA:   3'- uacuUGCCG--ACCGu--GUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 71011 0.66 0.783311
Target:  5'- -aGGACGGggGGC-CGCCGCCGg--- -3'
miRNA:   3'- uaCUUGCCgaCCGuGUGGCGGCgcaa -5'
8966 5' -59.6 NC_002512.2 + 220343 0.66 0.782416
Target:  5'- -cGGACGGCcucgucaacgccgUGGCcguggcCGCCGCCGcCGUg -3'
miRNA:   3'- uaCUUGCCG-------------ACCGu-----GUGGCGGC-GCAa -5'
8966 5' -59.6 NC_002512.2 + 201743 0.67 0.774309
Target:  5'- --cGACGGCUGGgGCGCCGaucCCGgGg- -3'
miRNA:   3'- uacUUGCCGACCgUGUGGC---GGCgCaa -5'
8966 5' -59.6 NC_002512.2 + 154595 0.67 0.774309
Target:  5'- --cGACGGC-GGCAucguCGCCGCCGCc-- -3'
miRNA:   3'- uacUUGCCGaCCGU----GUGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 179312 0.67 0.773403
Target:  5'- -cGGGCGGCgaggcgGGCagauccuGCAgCGCCGCGc- -3'
miRNA:   3'- uaCUUGCCGa-----CCG-------UGUgGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 45423 0.67 0.765189
Target:  5'- --cGACGGC-GGCGC-CgGCCGCGg- -3'
miRNA:   3'- uacUUGCCGaCCGUGuGgCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 111233 0.67 0.765189
Target:  5'- -cGGGCGGCcgGGCGC-CCGgaGCGUc -3'
miRNA:   3'- uaCUUGCCGa-CCGUGuGGCggCGCAa -5'
8966 5' -59.6 NC_002512.2 + 27974 0.67 0.765189
Target:  5'- gAUGGGCGGCcgGGCGagauuCCGgCGCGg- -3'
miRNA:   3'- -UACUUGCCGa-CCGUgu---GGCgGCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.