Results 21 - 40 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8967 | 3' | -52.1 | NC_002512.2 | + | 115881 | 0.66 | 0.994671 |
Target: 5'- gCUGCGGGGCc--GACggCGGCGGgaCCa -3' miRNA: 3'- -GACGUCCCGaacUUGuaGUUGUCg-GG- -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 114880 | 0.66 | 0.994671 |
Target: 5'- -aGCAGGGuCUggagGAAgGUgucCAcCAGCCCc -3' miRNA: 3'- gaCGUCCC-GAa---CUUgUA---GUuGUCGGG- -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 222895 | 0.66 | 0.991755 |
Target: 5'- cCUGCgacuucgAGGGCUccuGCGUCuggaggcuCGGCCCg -3' miRNA: 3'- -GACG-------UCCCGAacuUGUAGuu------GUCGGG- -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 219817 | 0.66 | 0.990706 |
Target: 5'- -cGCGGGGCgcgacaGGGgGUCGGucggggggucCGGCCCg -3' miRNA: 3'- gaCGUCCCGaa----CUUgUAGUU----------GUCGGG- -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 199269 | 0.66 | 0.990706 |
Target: 5'- aUGUcGGGCggcccGAACAUCcGC-GCCCu -3' miRNA: 3'- gACGuCCCGaa---CUUGUAGuUGuCGGG- -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 209031 | 0.66 | 0.991417 |
Target: 5'- -aGCGGGGCggccgcgucccgGAGCGauucCGACGGCUCc -3' miRNA: 3'- gaCGUCCCGaa----------CUUGUa---GUUGUCGGG- -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 135483 | 0.66 | 0.990706 |
Target: 5'- -gGUAG-GCg---GCAUCAACAGCCUg -3' miRNA: 3'- gaCGUCcCGaacuUGUAGUUGUCGGG- -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 91916 | 0.66 | 0.992908 |
Target: 5'- -gGCGGcGGCgcgc-CGUCGGCGGCCg -3' miRNA: 3'- gaCGUC-CCGaacuuGUAGUUGUCGGg -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 81840 | 0.66 | 0.993751 |
Target: 5'- uCUGCcggaccGGGUcgggGAGCGUCGGCgggaagcgacagaGGCCCa -3' miRNA: 3'- -GACGu-----CCCGaa--CUUGUAGUUG-------------UCGGG- -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 7625 | 0.66 | 0.99384 |
Target: 5'- -aGCAGGGCgcaGGcCAUCAcgAGaCCCg -3' miRNA: 3'- gaCGUCCCGaa-CUuGUAGUugUC-GGG- -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 42818 | 0.66 | 0.994671 |
Target: 5'- -aGCAcGGCcuccUGAGaCGUCAucCAGCCCg -3' miRNA: 3'- gaCGUcCCGa---ACUU-GUAGUu-GUCGGG- -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 86177 | 0.66 | 0.991866 |
Target: 5'- gCUGCGGGaGC-UGGAgGUC-GC-GCCCu -3' miRNA: 3'- -GACGUCC-CGaACUUgUAGuUGuCGGG- -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 62863 | 0.66 | 0.991866 |
Target: 5'- -gGCAGGGCagcacgGGGCcgCGAC-GCCg -3' miRNA: 3'- gaCGUCCCGaa----CUUGuaGUUGuCGGg -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 91728 | 0.66 | 0.990706 |
Target: 5'- -gGC-GGGUgcGGACAguUCGuCAGCCCg -3' miRNA: 3'- gaCGuCCCGaaCUUGU--AGUuGUCGGG- -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 122047 | 0.66 | 0.99384 |
Target: 5'- -cGCccGGGGCg---GCGUCGGCGGCUg -3' miRNA: 3'- gaCG--UCCCGaacuUGUAGUUGUCGGg -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 114029 | 0.66 | 0.994671 |
Target: 5'- -gGCAccGGGCgcggUGGACGUagagGGCgGGCCCg -3' miRNA: 3'- gaCGU--CCCGa---ACUUGUAg---UUG-UCGGG- -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 73038 | 0.67 | 0.988 |
Target: 5'- -aGCAGGuGU---GGCAgCAGCGGCCCc -3' miRNA: 3'- gaCGUCC-CGaacUUGUaGUUGUCGGG- -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 10475 | 0.67 | 0.988 |
Target: 5'- -cGCcccGGGCgUGGGCGUCGcgGCGGgCCg -3' miRNA: 3'- gaCGu--CCCGaACUUGUAGU--UGUCgGG- -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 118141 | 0.67 | 0.988 |
Target: 5'- -gGCGGGGgcgGAACcgCGACAuggcgaccguGCCCg -3' miRNA: 3'- gaCGUCCCgaaCUUGuaGUUGU----------CGGG- -5' |
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8967 | 3' | -52.1 | NC_002512.2 | + | 174053 | 0.67 | 0.986437 |
Target: 5'- -aGCGGuGGCUUGcAACAUCuGguGUCUg -3' miRNA: 3'- gaCGUC-CCGAAC-UUGUAGuUguCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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