miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 3' -52.1 NC_002512.2 + 62863 0.66 0.991866
Target:  5'- -gGCAGGGCagcacgGGGCcgCGAC-GCCg -3'
miRNA:   3'- gaCGUCCCGaa----CUUGuaGUUGuCGGg -5'
8967 3' -52.1 NC_002512.2 + 97669 0.66 0.99534
Target:  5'- -cGCAGGaGCUgcucaUGGGCGUCcucaacgcggucgAGCAGCUg -3'
miRNA:   3'- gaCGUCC-CGA-----ACUUGUAG-------------UUGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 115881 0.66 0.994671
Target:  5'- gCUGCGGGGCc--GACggCGGCGGgaCCa -3'
miRNA:   3'- -GACGUCCCGaacUUGuaGUUGUCg-GG- -5'
8967 3' -52.1 NC_002512.2 + 91916 0.66 0.992908
Target:  5'- -gGCGGcGGCgcgc-CGUCGGCGGCCg -3'
miRNA:   3'- gaCGUC-CCGaacuuGUAGUUGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 91728 0.66 0.990706
Target:  5'- -gGC-GGGUgcGGACAguUCGuCAGCCCg -3'
miRNA:   3'- gaCGuCCCGaaCUUGU--AGUuGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 81840 0.66 0.993751
Target:  5'- uCUGCcggaccGGGUcgggGAGCGUCGGCgggaagcgacagaGGCCCa -3'
miRNA:   3'- -GACGu-----CCCGaa--CUUGUAGUUG-------------UCGGG- -5'
8967 3' -52.1 NC_002512.2 + 114880 0.66 0.994671
Target:  5'- -aGCAGGGuCUggagGAAgGUgucCAcCAGCCCc -3'
miRNA:   3'- gaCGUCCC-GAa---CUUgUA---GUuGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 7625 0.66 0.99384
Target:  5'- -aGCAGGGCgcaGGcCAUCAcgAGaCCCg -3'
miRNA:   3'- gaCGUCCCGaa-CUuGUAGUugUC-GGG- -5'
8967 3' -52.1 NC_002512.2 + 122047 0.66 0.99384
Target:  5'- -cGCccGGGGCg---GCGUCGGCGGCUg -3'
miRNA:   3'- gaCG--UCCCGaacuUGUAGUUGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 30783 0.66 0.995409
Target:  5'- gCUGCAGaGGg-UGAACGUgGaccugGCGGCCa -3'
miRNA:   3'- -GACGUC-CCgaACUUGUAgU-----UGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 86177 0.66 0.991866
Target:  5'- gCUGCGGGaGC-UGGAgGUC-GC-GCCCu -3'
miRNA:   3'- -GACGUCC-CGaACUUgUAGuUGuCGGG- -5'
8967 3' -52.1 NC_002512.2 + 186200 0.66 0.994671
Target:  5'- cCUGgAGGGCUcGGGCGcCGaugacgccGCGGCCg -3'
miRNA:   3'- -GACgUCCCGAaCUUGUaGU--------UGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 136186 0.66 0.995409
Target:  5'- -gGCGGGGUcgccggGAucGCGUCGacgccgGCGGCCUg -3'
miRNA:   3'- gaCGUCCCGaa----CU--UGUAGU------UGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 55678 0.66 0.995409
Target:  5'- -gGCGGGGCgcUGAACGcgCcGCuguucGCCCa -3'
miRNA:   3'- gaCGUCCCGa-ACUUGUa-GuUGu----CGGG- -5'
8967 3' -52.1 NC_002512.2 + 42818 0.66 0.994671
Target:  5'- -aGCAcGGCcuccUGAGaCGUCAucCAGCCCg -3'
miRNA:   3'- gaCGUcCCGa---ACUU-GUAGUu-GUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 131150 0.66 0.995409
Target:  5'- -gGCAGGGCggccGAGaggaagCGGCcgAGCCCg -3'
miRNA:   3'- gaCGUCCCGaa--CUUgua---GUUG--UCGGG- -5'
8967 3' -52.1 NC_002512.2 + 210704 0.66 0.994671
Target:  5'- -cGCGGGagaucacccGCUUccucAGCGUCGACgAGCCCu -3'
miRNA:   3'- gaCGUCC---------CGAAc---UUGUAGUUG-UCGGG- -5'
8967 3' -52.1 NC_002512.2 + 25331 0.66 0.995409
Target:  5'- -cGgAGGGCguucUUGAACAgCAcGCGGUCCu -3'
miRNA:   3'- gaCgUCCCG----AACUUGUaGU-UGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 165888 0.66 0.994671
Target:  5'- ----cGGGCUacAACAUCAACGGCUUc -3'
miRNA:   3'- gacguCCCGAacUUGUAGUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 169924 0.66 0.994671
Target:  5'- -cGuCAGGGacgugUUGAACAUCAcguuCGuGCCCg -3'
miRNA:   3'- gaC-GUCCCg----AACUUGUAGUu---GU-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.