miRNA display CGI


Results 1 - 20 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 3' -52.1 NC_002512.2 + 8110 0.7 0.940512
Target:  5'- -aGCAGGcGCcaGGACA-CGACGGCCg -3'
miRNA:   3'- gaCGUCC-CGaaCUUGUaGUUGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 72150 0.71 0.907852
Target:  5'- uUGCAGGcCUUGAugGacgccgacuucuUCAcguaGCAGCCCg -3'
miRNA:   3'- gACGUCCcGAACUugU------------AGU----UGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 42789 0.71 0.907852
Target:  5'- -cGUAGGGCUgucg-GUCGACGGCCa -3'
miRNA:   3'- gaCGUCCCGAacuugUAGUUGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 83610 0.71 0.913903
Target:  5'- -cGCcGGGgUUGGACAcggcguUCAgGCGGCCCa -3'
miRNA:   3'- gaCGuCCCgAACUUGU------AGU-UGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 93535 0.71 0.913903
Target:  5'- gCUGU-GGGa--GAACGUCAGCgGGCCCa -3'
miRNA:   3'- -GACGuCCCgaaCUUGUAGUUG-UCGGG- -5'
8967 3' -52.1 NC_002512.2 + 2306 0.71 0.919711
Target:  5'- -gGCGGGGCUcUGcuGCGcCGGCGGUCCg -3'
miRNA:   3'- gaCGUCCCGA-ACu-UGUaGUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 83211 0.71 0.925276
Target:  5'- -cGCGGGGCgggggGAGCGUCggUcccggggaAGCCUc -3'
miRNA:   3'- gaCGUCCCGaa---CUUGUAGuuG--------UCGGG- -5'
8967 3' -52.1 NC_002512.2 + 4225 0.7 0.930598
Target:  5'- -cGCGGGGagcgGGACGUCG--AGCCCc -3'
miRNA:   3'- gaCGUCCCgaa-CUUGUAGUugUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 152819 0.7 0.935676
Target:  5'- -gGC-GGGCggcGAGCAggaUCAGCAGCgCCa -3'
miRNA:   3'- gaCGuCCCGaa-CUUGU---AGUUGUCG-GG- -5'
8967 3' -52.1 NC_002512.2 + 107047 0.71 0.895035
Target:  5'- -aGCAGGGCggcGAcCGUCG-CGGCCUc -3'
miRNA:   3'- gaCGUCCCGaa-CUuGUAGUuGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 74099 0.72 0.891006
Target:  5'- -gGCAGGGCacGAgcugcccggcguacaGCAUCuccuuCAGCCCg -3'
miRNA:   3'- gaCGUCCCGaaCU---------------UGUAGuu---GUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 112832 0.72 0.866627
Target:  5'- gUGCuccGGCacGAACggCAGCAGCCCg -3'
miRNA:   3'- gACGuc-CCGaaCUUGuaGUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 17875 0.75 0.743254
Target:  5'- -cGCAGGGCccgggGGACGUgauaggcggCGGCGGCCCc -3'
miRNA:   3'- gaCGUCCCGaa---CUUGUA---------GUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 80863 0.75 0.762651
Target:  5'- -cGCGGGGCUcggugucGGGCGguccgCGGCGGCCCc -3'
miRNA:   3'- gaCGUCCCGAa------CUUGUa----GUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 155084 0.74 0.772178
Target:  5'- gCUGCcGGGUgcccGGGCGUCAGCAGUCg -3'
miRNA:   3'- -GACGuCCCGaa--CUUGUAGUUGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 12813 0.74 0.797237
Target:  5'- aUGCucGGGCggcUGAACAUCAccgacaugcagcacGCGGCCUg -3'
miRNA:   3'- gACGu-CCCGa--ACUUGUAGU--------------UGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 124988 0.74 0.799956
Target:  5'- cCUGCAGGGCgucgGAguGCAUCGGgGccagggacGCCCg -3'
miRNA:   3'- -GACGUCCCGaa--CU--UGUAGUUgU--------CGGG- -5'
8967 3' -52.1 NC_002512.2 + 54260 0.73 0.826344
Target:  5'- -gGCAGGGCggcGGCGUCGGCGaCCCu -3'
miRNA:   3'- gaCGUCCCGaacUUGUAGUUGUcGGG- -5'
8967 3' -52.1 NC_002512.2 + 72885 0.73 0.83479
Target:  5'- -cGCGGGGCUcGGGCccgaagCGGCGGCCg -3'
miRNA:   3'- gaCGUCCCGAaCUUGua----GUUGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 94721 0.73 0.850316
Target:  5'- -cGCGGGGCgcaGGcguucgcuggccaGCAUCAccaggGCGGCCCg -3'
miRNA:   3'- gaCGUCCCGaa-CU-------------UGUAGU-----UGUCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.