miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 3' -52.1 NC_002512.2 + 205548 1.13 0.004931
Target:  5'- gCUGCAGGGCUUGAACAUCAACAGCCCg -3'
miRNA:   3'- -GACGUCCCGAACUUGUAGUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 117011 0.76 0.713439
Target:  5'- -cGCAGGGCgggcgcaaGAuCAUCGGCGGCCg -3'
miRNA:   3'- gaCGUCCCGaa------CUuGUAGUUGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 176773 0.75 0.733402
Target:  5'- cCUGCAGGGCUcgGGACA---GCucGCCCg -3'
miRNA:   3'- -GACGUCCCGAa-CUUGUaguUGu-CGGG- -5'
8967 3' -52.1 NC_002512.2 + 17875 0.75 0.743254
Target:  5'- -cGCAGGGCccgggGGACGUgauaggcggCGGCGGCCCc -3'
miRNA:   3'- gaCGUCCCGaa---CUUGUA---------GUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 80863 0.75 0.762651
Target:  5'- -cGCGGGGCUcggugucGGGCGguccgCGGCGGCCCc -3'
miRNA:   3'- gaCGUCCCGAa------CUUGUa----GUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 155084 0.74 0.772178
Target:  5'- gCUGCcGGGUgcccGGGCGUCAGCAGUCg -3'
miRNA:   3'- -GACGuCCCGaa--CUUGUAGUUGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 12813 0.74 0.797237
Target:  5'- aUGCucGGGCggcUGAACAUCAccgacaugcagcacGCGGCCUg -3'
miRNA:   3'- gACGu-CCCGa--ACUUGUAGU--------------UGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 124988 0.74 0.799956
Target:  5'- cCUGCAGGGCgucgGAguGCAUCGGgGccagggacGCCCg -3'
miRNA:   3'- -GACGUCCCGaa--CU--UGUAGUUgU--------CGGG- -5'
8967 3' -52.1 NC_002512.2 + 130176 0.74 0.799956
Target:  5'- gUGCAGGGCguaGAAgA-CGAgGGCCCg -3'
miRNA:   3'- gACGUCCCGaa-CUUgUaGUUgUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 54260 0.73 0.826344
Target:  5'- -gGCAGGGCggcGGCGUCGGCGaCCCu -3'
miRNA:   3'- gaCGUCCCGaacUUGUAGUUGUcGGG- -5'
8967 3' -52.1 NC_002512.2 + 160780 0.73 0.83479
Target:  5'- -aGCGGGGCcgGcGCAgCAGCAGCCa -3'
miRNA:   3'- gaCGUCCCGaaCuUGUaGUUGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 72885 0.73 0.83479
Target:  5'- -cGCGGGGCUcGGGCccgaagCGGCGGCCg -3'
miRNA:   3'- gaCGUCCCGAaCUUGua----GUUGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 94721 0.73 0.850316
Target:  5'- -cGCGGGGCgcaGGcguucgcuggccaGCAUCAccaggGCGGCCCg -3'
miRNA:   3'- gaCGUCCCGaa-CU-------------UGUAGU-----UGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 159884 0.73 0.851113
Target:  5'- -cGCAGGGggUGGAggugUGUCGACGGCUCu -3'
miRNA:   3'- gaCGUCCCgaACUU----GUAGUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 112913 0.72 0.866627
Target:  5'- -cGCccGGacgGGGCGUCGGCGGCCCg -3'
miRNA:   3'- gaCGucCCgaaCUUGUAGUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 112832 0.72 0.866627
Target:  5'- gUGCuccGGCacGAACggCAGCAGCCCg -3'
miRNA:   3'- gACGuc-CCGaaCUUGuaGUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 161380 0.72 0.888274
Target:  5'- -aGCAGGucuaccGCUU---CAUCAACGGCCCg -3'
miRNA:   3'- gaCGUCC------CGAAcuuGUAGUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 74099 0.72 0.891006
Target:  5'- -gGCAGGGCacGAgcugcccggcguacaGCAUCuccuuCAGCCCg -3'
miRNA:   3'- gaCGUCCCGaaCU---------------UGUAGuu---GUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 107047 0.71 0.895035
Target:  5'- -aGCAGGGCggcGAcCGUCG-CGGCCUc -3'
miRNA:   3'- gaCGUCCCGaa-CUuGUAGUuGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 42789 0.71 0.907852
Target:  5'- -cGUAGGGCUgucg-GUCGACGGCCa -3'
miRNA:   3'- gaCGUCCCGAacuugUAGUUGUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.