miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 3' -52.1 NC_002512.2 + 2306 0.71 0.919711
Target:  5'- -gGCGGGGCUcUGcuGCGcCGGCGGUCCg -3'
miRNA:   3'- gaCGUCCCGA-ACu-UGUaGUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 4225 0.7 0.930598
Target:  5'- -cGCGGGGagcgGGACGUCG--AGCCCc -3'
miRNA:   3'- gaCGUCCCgaa-CUUGUAGUugUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 4448 0.68 0.97858
Target:  5'- gUGCcGGGCgcGGGgGUCGGCgucGGCCCc -3'
miRNA:   3'- gACGuCCCGaaCUUgUAGUUG---UCGGG- -5'
8967 3' -52.1 NC_002512.2 + 5194 0.68 0.976175
Target:  5'- -aGCAGGGCgggcaGGACcgCGGgcCAGCCg -3'
miRNA:   3'- gaCGUCCCGaa---CUUGuaGUU--GUCGGg -5'
8967 3' -52.1 NC_002512.2 + 7625 0.66 0.99384
Target:  5'- -aGCAGGGCgcaGGcCAUCAcgAGaCCCg -3'
miRNA:   3'- gaCGUCCCGaa-CUuGUAGUugUC-GGG- -5'
8967 3' -52.1 NC_002512.2 + 8110 0.7 0.940512
Target:  5'- -aGCAGGcGCcaGGACA-CGACGGCCg -3'
miRNA:   3'- gaCGUCC-CGaaCUUGUaGUUGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 10475 0.67 0.988
Target:  5'- -cGCcccGGGCgUGGGCGUCGcgGCGGgCCg -3'
miRNA:   3'- gaCGu--CCCGaACUUGUAGU--UGUCgGG- -5'
8967 3' -52.1 NC_002512.2 + 12813 0.74 0.797237
Target:  5'- aUGCucGGGCggcUGAACAUCAccgacaugcagcacGCGGCCUg -3'
miRNA:   3'- gACGu-CCCGa--ACUUGUAGU--------------UGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 16830 0.69 0.95318
Target:  5'- -cGCGGGGC-UGGGCAgggCGaucucgaucccccGCAGCCg -3'
miRNA:   3'- gaCGUCCCGaACUUGUa--GU-------------UGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 17875 0.75 0.743254
Target:  5'- -cGCAGGGCccgggGGACGUgauaggcggCGGCGGCCCc -3'
miRNA:   3'- gaCGUCCCGaa---CUUGUA---------GUUGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 18714 0.68 0.976175
Target:  5'- -aGCAGGGCggcGAcgcGCucgggCAGCAcGCCCu -3'
miRNA:   3'- gaCGUCCCGaa-CU---UGua---GUUGU-CGGG- -5'
8967 3' -52.1 NC_002512.2 + 22474 0.67 0.987851
Target:  5'- gUGCAGcaGGCcaUGGACAUgagcgcgCAGCAGCCg -3'
miRNA:   3'- gACGUC--CCGa-ACUUGUA-------GUUGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 25331 0.66 0.995409
Target:  5'- -cGgAGGGCguucUUGAACAgCAcGCGGUCCu -3'
miRNA:   3'- gaCgUCCCG----AACUUGUaGU-UGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 30414 0.68 0.973577
Target:  5'- -gGaCGGGGaCgcGGGCGUCGucGCGGCCCu -3'
miRNA:   3'- gaC-GUCCC-GaaCUUGUAGU--UGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 30783 0.66 0.995409
Target:  5'- gCUGCAGaGGg-UGAACGUgGaccugGCGGCCa -3'
miRNA:   3'- -GACGUC-CCgaACUUGUAgU-----UGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 39403 0.7 0.949462
Target:  5'- -aGCAGGGaCUUGAACGgcuccucgCcgUAGUCCa -3'
miRNA:   3'- gaCGUCCC-GAACUUGUa-------GuuGUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 42789 0.71 0.907852
Target:  5'- -cGUAGGGCUgucg-GUCGACGGCCa -3'
miRNA:   3'- gaCGUCCCGAacuugUAGUUGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 42818 0.66 0.994671
Target:  5'- -aGCAcGGCcuccUGAGaCGUCAucCAGCCCg -3'
miRNA:   3'- gaCGUcCCGa---ACUU-GUAGUu-GUCGGG- -5'
8967 3' -52.1 NC_002512.2 + 44902 0.67 0.986437
Target:  5'- -cGCAGcGCUc--ACGUCGACGGCCg -3'
miRNA:   3'- gaCGUCcCGAacuUGUAGUUGUCGGg -5'
8967 3' -52.1 NC_002512.2 + 46508 0.69 0.961126
Target:  5'- gUGUcGaGGCg-GAACAUCAGCAGgCCg -3'
miRNA:   3'- gACGuC-CCGaaCUUGUAGUUGUCgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.