miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 133240 0.66 0.717093
Target:  5'- gGGaGGGCgGCGG--CGCCCCgGUCGCg- -3'
miRNA:   3'- -CC-CCUGgCGUCaaGCGGGG-CGGCGac -5'
8967 5' -63 NC_002512.2 + 61725 0.66 0.738947
Target:  5'- cGGGGGCCGC-GUccccucUCcgccccccacccccaGCCCCucGCCGCg- -3'
miRNA:   3'- -CCCCUGGCGuCA------AG---------------CGGGG--CGGCGac -5'
8967 5' -63 NC_002512.2 + 48289 0.66 0.735334
Target:  5'- aGGaGGACguCGCGGacccgcCGCCCCuGCCGCc- -3'
miRNA:   3'- -CC-CCUG--GCGUCaa----GCGGGG-CGGCGac -5'
8967 5' -63 NC_002512.2 + 37270 0.66 0.735334
Target:  5'- aGGuGaGGCCGCcg-UCG-CCCGCCGCg- -3'
miRNA:   3'- -CC-C-CUGGCGucaAGCgGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 127409 0.66 0.726248
Target:  5'- cGGGACCGCcaccgcgacgGGcgCGCCCUccuCCGCg- -3'
miRNA:   3'- cCCCUGGCG----------UCaaGCGGGGc--GGCGac -5'
8967 5' -63 NC_002512.2 + 99659 0.66 0.726248
Target:  5'- cGGGGCC-CAGagguuCCCCGCCGCc- -3'
miRNA:   3'- cCCCUGGcGUCaagc-GGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 24481 0.66 0.726248
Target:  5'- aGGaGGcGCCGgAGUUcCGCUgCGCCGCc- -3'
miRNA:   3'- -CC-CC-UGGCgUCAA-GCGGgGCGGCGac -5'
8967 5' -63 NC_002512.2 + 137082 0.66 0.717093
Target:  5'- cGGGAacaggcCCGCGGUgugCGCCCagGCgCGCg- -3'
miRNA:   3'- cCCCU------GGCGUCAa--GCGGGg-CG-GCGac -5'
8967 5' -63 NC_002512.2 + 108906 0.66 0.717093
Target:  5'- cGGGGCC-C-GUUCGCCggUGCUGCUGg -3'
miRNA:   3'- cCCCUGGcGuCAAGCGGg-GCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 105447 0.66 0.717093
Target:  5'- cGGGGuuccuCCGCAGgacguucgUCGUCCCG-UGCa- -3'
miRNA:   3'- -CCCCu----GGCGUCa-------AGCGGGGCgGCGac -5'
8967 5' -63 NC_002512.2 + 73371 0.66 0.707876
Target:  5'- -cGGACCcCcg--CGCCCCGCCGCc- -3'
miRNA:   3'- ccCCUGGcGucaaGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 25179 0.66 0.717093
Target:  5'- cGGGcCCGCcGUcgccgacgUCGCgUCCGCCGCg- -3'
miRNA:   3'- cCCCuGGCGuCA--------AGCG-GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 121772 0.67 0.679923
Target:  5'- cGGGACCGCGGacCGCCgaggcggggaCGCCGaaGa -3'
miRNA:   3'- cCCCUGGCGUCaaGCGGg---------GCGGCgaC- -5'
8967 5' -63 NC_002512.2 + 50566 0.67 0.679923
Target:  5'- cGGcGCUGCAGgaucugccCGCCUCGCCGCc- -3'
miRNA:   3'- cCCcUGGCGUCaa------GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 44985 0.67 0.679923
Target:  5'- aGGGGCaGUAG--CGCCgCCGCcCGCUGa -3'
miRNA:   3'- cCCCUGgCGUCaaGCGG-GGCG-GCGAC- -5'
8967 5' -63 NC_002512.2 + 218593 0.67 0.670529
Target:  5'- -cGGAUCGCAacUCGUCCCGCUGUg- -3'
miRNA:   3'- ccCCUGGCGUcaAGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 93378 0.67 0.670529
Target:  5'- aGGGGaucggGCCGCAGggCGCgCCGaaCGCg- -3'
miRNA:   3'- -CCCC-----UGGCGUCaaGCGgGGCg-GCGac -5'
8967 5' -63 NC_002512.2 + 4044 0.67 0.661108
Target:  5'- cGGGACaggaGCGGcUCGaucCCCCGCgGCUc -3'
miRNA:   3'- cCCCUGg---CGUCaAGC---GGGGCGgCGAc -5'
8967 5' -63 NC_002512.2 + 116737 0.67 0.632753
Target:  5'- --cGGCCGCGGcgaggccggCGCCCCGCgCGCg- -3'
miRNA:   3'- cccCUGGCGUCaa-------GCGGGGCG-GCGac -5'
8967 5' -63 NC_002512.2 + 129880 0.67 0.632753
Target:  5'- gGGGGAuUCGCcg-UCGCCCuCGCCGaCg- -3'
miRNA:   3'- -CCCCU-GGCGucaAGCGGG-GCGGC-Gac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.