Results 21 - 40 of 180 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8967 | 5' | -63 | NC_002512.2 | + | 102886 | 0.66 | 0.689283 |
Target: 5'- gGGGGACC-CGGguaCGaCCCG-CGCUGg -3' miRNA: 3'- -CCCCUGGcGUCaa-GCgGGGCgGCGAC- -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 28030 | 0.66 | 0.743446 |
Target: 5'- -cGGACCGCAG---GCCCCaggcgagcugccgGCCGCg- -3' miRNA: 3'- ccCCUGGCGUCaagCGGGG-------------CGGCGac -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 57174 | 0.66 | 0.744343 |
Target: 5'- cGGGuuGCCGCAGggCaCCUCGCgGCa- -3' miRNA: 3'- cCCC--UGGCGUCaaGcGGGGCGgCGac -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 105447 | 0.66 | 0.717093 |
Target: 5'- cGGGGuuccuCCGCAGgacguucgUCGUCCCG-UGCa- -3' miRNA: 3'- -CCCCu----GGCGUCa-------AGCGGGGCgGCGac -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 110207 | 0.66 | 0.744343 |
Target: 5'- aGGGGugCG-GGUgUCGCUuaaugagggCCGCCGCg- -3' miRNA: 3'- -CCCCugGCgUCA-AGCGG---------GGCGGCGac -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 115900 | 0.66 | 0.744343 |
Target: 5'- cGGGACCau-GUUCaCCCUGCUGCa- -3' miRNA: 3'- cCCCUGGcguCAAGcGGGGCGGCGac -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 27457 | 0.66 | 0.744343 |
Target: 5'- uGGGGAcuCCGCGGgucaCGCCacuguuCCGCgCGCg- -3' miRNA: 3'- -CCCCU--GGCGUCaa--GCGG------GGCG-GCGac -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 137082 | 0.66 | 0.717093 |
Target: 5'- cGGGAacaggcCCGCGGUgugCGCCCagGCgCGCg- -3' miRNA: 3'- cCCCU------GGCGUCAa--GCGGGg-CG-GCGac -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 48289 | 0.66 | 0.735334 |
Target: 5'- aGGaGGACguCGCGGacccgcCGCCCCuGCCGCc- -3' miRNA: 3'- -CC-CCUG--GCGUCaa----GCGGGG-CGGCGac -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 192880 | 0.66 | 0.744343 |
Target: 5'- cGGGGACgcauauaagCGCcGUcgCGCUCCGCgGCg- -3' miRNA: 3'- -CCCCUG---------GCGuCAa-GCGGGGCGgCGac -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 217942 | 0.66 | 0.741649 |
Target: 5'- uGGGGACCgggGCGGggaacgacugccuaUUUGCCgagCGCCGCUu -3' miRNA: 3'- -CCCCUGG---CGUC--------------AAGCGGg--GCGGCGAc -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 142620 | 0.66 | 0.744343 |
Target: 5'- --cGACCGCGuGUUCGCUCC-CCGgaGa -3' miRNA: 3'- cccCUGGCGU-CAAGCGGGGcGGCgaC- -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 77535 | 0.66 | 0.744343 |
Target: 5'- cGGGACCGgAGa-CGCCUaCGUCGCg- -3' miRNA: 3'- cCCCUGGCgUCaaGCGGG-GCGGCGac -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 106305 | 0.66 | 0.744343 |
Target: 5'- --cGACCGCGGgcccgUCGUccagCCCGUCGCUc -3' miRNA: 3'- cccCUGGCGUCa----AGCG----GGGCGGCGAc -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 218993 | 0.66 | 0.744343 |
Target: 5'- cGGGGuCCGCAac-CGCCUCcuccagcacuGCUGCUGc -3' miRNA: 3'- -CCCCuGGCGUcaaGCGGGG----------CGGCGAC- -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 47618 | 0.66 | 0.698603 |
Target: 5'- -cGGACgUGCAGUUCcccguccugGCgCCGUCGCUGu -3' miRNA: 3'- ccCCUG-GCGUCAAG---------CGgGGCGGCGAC- -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 183515 | 0.66 | 0.744343 |
Target: 5'- gGGGaGGCCGUcc-UCGCCUgGCUGCg- -3' miRNA: 3'- -CCC-CUGGCGucaAGCGGGgCGGCGac -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 75293 | 0.66 | 0.743446 |
Target: 5'- cGGcGGcgacgauGCCGCcg-UCGCCCuCGCCGUUa -3' miRNA: 3'- -CC-CC-------UGGCGucaAGCGGG-GCGGCGAc -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 171906 | 0.66 | 0.726248 |
Target: 5'- cGGGACuCGgugauaGGUUCGUcgcccucuucgCCCGCCGCg- -3' miRNA: 3'- cCCCUG-GCg-----UCAAGCG-----------GGGCGGCGac -5' |
|||||||
8967 | 5' | -63 | NC_002512.2 | + | 25179 | 0.66 | 0.717093 |
Target: 5'- cGGGcCCGCcGUcgccgacgUCGCgUCCGCCGCg- -3' miRNA: 3'- cCCCuGGCGuCA--------AGCG-GGGCGGCGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home