miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 38927 0.66 0.689283
Target:  5'- aGGGGccGCCGCGGcgggCGCCCgCGUgCGCc- -3'
miRNA:   3'- -CCCC--UGGCGUCaa--GCGGG-GCG-GCGac -5'
8967 5' -63 NC_002512.2 + 108906 0.66 0.717093
Target:  5'- cGGGGCC-C-GUUCGCCggUGCUGCUGg -3'
miRNA:   3'- cCCCUGGcGuCAAGCGGg-GCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 98583 0.66 0.698603
Target:  5'- -cGGGCgGCGGgUCGUCCgCGCUGCa- -3'
miRNA:   3'- ccCCUGgCGUCaAGCGGG-GCGGCGac -5'
8967 5' -63 NC_002512.2 + 102886 0.66 0.689283
Target:  5'- gGGGGACC-CGGguaCGaCCCG-CGCUGg -3'
miRNA:   3'- -CCCCUGGcGUCaa-GCgGGGCgGCGAC- -5'
8967 5' -63 NC_002512.2 + 73371 0.66 0.707876
Target:  5'- -cGGACCcCcg--CGCCCCGCCGCc- -3'
miRNA:   3'- ccCCUGGcGucaaGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 23665 0.66 0.689283
Target:  5'- -uGGACCuGCGGUacuucaaGCCCCagcaccGCCGCUGc -3'
miRNA:   3'- ccCCUGG-CGUCAag-----CGGGG------CGGCGAC- -5'
8967 5' -63 NC_002512.2 + 23757 0.66 0.707876
Target:  5'- uGGcGACCGgA---CGCCCCGCUGCg- -3'
miRNA:   3'- cCC-CUGGCgUcaaGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 40948 0.66 0.689283
Target:  5'- aGGGaaccGACCGCcg--CGCCCCGCCa--- -3'
miRNA:   3'- -CCC----CUGGCGucaaGCGGGGCGGcgac -5'
8967 5' -63 NC_002512.2 + 141432 0.66 0.697673
Target:  5'- aGGGGACU-------GCCCCGCCuGCUGg -3'
miRNA:   3'- -CCCCUGGcgucaagCGGGGCGG-CGAC- -5'
8967 5' -63 NC_002512.2 + 47618 0.66 0.698603
Target:  5'- -cGGACgUGCAGUUCcccguccugGCgCCGUCGCUGu -3'
miRNA:   3'- ccCCUG-GCGUCAAG---------CGgGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 137082 0.66 0.717093
Target:  5'- cGGGAacaggcCCGCGGUgugCGCCCagGCgCGCg- -3'
miRNA:   3'- cCCCU------GGCGUCAa--GCGGGg-CG-GCGac -5'
8967 5' -63 NC_002512.2 + 105447 0.66 0.717093
Target:  5'- cGGGGuuccuCCGCAGgacguucgUCGUCCCG-UGCa- -3'
miRNA:   3'- -CCCCu----GGCGUCa-------AGCGGGGCgGCGac -5'
8967 5' -63 NC_002512.2 + 133240 0.66 0.717093
Target:  5'- gGGaGGGCgGCGG--CGCCCCgGUCGCg- -3'
miRNA:   3'- -CC-CCUGgCGUCaaGCGGGG-CGGCGac -5'
8967 5' -63 NC_002512.2 + 45333 0.66 0.698603
Target:  5'- cGGaGGGCCGUccgccGGccCGCgCCGCCgGCUGa -3'
miRNA:   3'- -CC-CCUGGCG-----UCaaGCGgGGCGG-CGAC- -5'
8967 5' -63 NC_002512.2 + 63887 0.66 0.705099
Target:  5'- cGGaGCCGUcgggagAGUUgacgaagaaccgacCGCCCCGCCGCa- -3'
miRNA:   3'- cCCcUGGCG------UCAA--------------GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 186768 0.66 0.707876
Target:  5'- gGGGGGUCGCGGUcUCGUuuucucagcuUCUGCCGCa- -3'
miRNA:   3'- -CCCCUGGCGUCA-AGCG----------GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 112770 0.66 0.698603
Target:  5'- ---cGCCGCGGg--GCCCCguGCCGCUGu -3'
miRNA:   3'- ccccUGGCGUCaagCGGGG--CGGCGAC- -5'
8967 5' -63 NC_002512.2 + 25179 0.66 0.717093
Target:  5'- cGGGcCCGCcGUcgccgacgUCGCgUCCGCCGCg- -3'
miRNA:   3'- cCCCuGGCGuCA--------AGCG-GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 95031 0.66 0.705099
Target:  5'- gGGGGGCggucaggcugugcgUGUAGUagGCCuCCGCCGUc- -3'
miRNA:   3'- -CCCCUG--------------GCGUCAagCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 66006 0.66 0.698603
Target:  5'- uGGGGGucUCGCAG--CGCUCCGuCCGgUGg -3'
miRNA:   3'- -CCCCU--GGCGUCaaGCGGGGC-GGCgAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.