miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 82325 0.7 0.476345
Target:  5'- -aGGGCCGCGGgcCGCCCCGgCGg-- -3'
miRNA:   3'- ccCCUGGCGUCaaGCGGGGCgGCgac -5'
8967 5' -63 NC_002512.2 + 94973 0.71 0.409397
Target:  5'- aGGuGGCUGCGGaUCGCCCCGUCGa-- -3'
miRNA:   3'- cCC-CUGGCGUCaAGCGGGGCGGCgac -5'
8967 5' -63 NC_002512.2 + 96289 0.71 0.409397
Target:  5'- gGGGGcuGCCGCGG---GCCgCCGCCGCg- -3'
miRNA:   3'- -CCCC--UGGCGUCaagCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 134759 0.71 0.432998
Target:  5'- gGGcGGACCGUccGGUUCGUcggcgggCCCGCCGUc- -3'
miRNA:   3'- -CC-CCUGGCG--UCAAGCG-------GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 10745 0.71 0.447196
Target:  5'- aGGuGGACaGCAGguagagcgcgucgUCgGCCCCGCCGCg- -3'
miRNA:   3'- -CC-CCUGgCGUCa------------AG-CGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 49231 0.7 0.459081
Target:  5'- cGGGGccACCGCGG--CGgCCUGCCGCa- -3'
miRNA:   3'- -CCCC--UGGCGUCaaGCgGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 60812 0.7 0.467672
Target:  5'- -cGGGCCGCGa--CGCCgCCGCCGCg- -3'
miRNA:   3'- ccCCUGGCGUcaaGCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 122669 0.7 0.467672
Target:  5'- cGGuGACCGCGGcUC-CCCgGCCGCg- -3'
miRNA:   3'- cCC-CUGGCGUCaAGcGGGgCGGCGac -5'
8967 5' -63 NC_002512.2 + 98103 0.7 0.467672
Target:  5'- cGGGGACggCGCGGgaCGaCCUCGUCGCg- -3'
miRNA:   3'- -CCCCUG--GCGUCaaGC-GGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 10170 0.72 0.401446
Target:  5'- cGGGGGCCGCcucucgCGCCCCGagCGCc- -3'
miRNA:   3'- -CCCCUGGCGucaa--GCGGGGCg-GCGac -5'
8967 5' -63 NC_002512.2 + 44682 0.72 0.385843
Target:  5'- cGGGccACCGCGGcgUCGaCCgCCGCCGCg- -3'
miRNA:   3'- cCCC--UGGCGUCa-AGC-GG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 37737 0.72 0.370646
Target:  5'- aGGGGCCGCGGgaucUgGCCCgCGCCgaagaaGCUGa -3'
miRNA:   3'- cCCCUGGCGUCa---AgCGGG-GCGG------CGAC- -5'
8967 5' -63 NC_002512.2 + 139429 0.78 0.167604
Target:  5'- cGGGGAcCCGCAGcUgGCCCgGCCGCc- -3'
miRNA:   3'- -CCCCU-GGCGUCaAgCGGGgCGGCGac -5'
8967 5' -63 NC_002512.2 + 70895 0.76 0.211209
Target:  5'- cGGGGCCGCcgccucCGCCCCGCCGUg- -3'
miRNA:   3'- cCCCUGGCGucaa--GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 83163 0.76 0.231229
Target:  5'- cGGcGGCCGCGGccgcCGCCCCGCCGUc- -3'
miRNA:   3'- cCC-CUGGCGUCaa--GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 103099 0.75 0.241827
Target:  5'- cGGGGACgggCGCGGcacgcgUCGCCgCCGCCGCc- -3'
miRNA:   3'- -CCCCUG---GCGUCa-----AGCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 70730 0.75 0.252826
Target:  5'- gGGGGACgGgAGcgCGCCCgGCCGCc- -3'
miRNA:   3'- -CCCCUGgCgUCaaGCGGGgCGGCGac -5'
8967 5' -63 NC_002512.2 + 131040 0.75 0.270092
Target:  5'- cGGGGCCGCGGgggaggacggCGCCgCGCCGgaGg -3'
miRNA:   3'- cCCCUGGCGUCaa--------GCGGgGCGGCgaC- -5'
8967 5' -63 NC_002512.2 + 94080 0.74 0.282122
Target:  5'- cGGGACCGUcgg-CGuCCCCGCCGCg- -3'
miRNA:   3'- cCCCUGGCGucaaGC-GGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 154591 0.74 0.294573
Target:  5'- aGGGcGACgGCGGcaucgUCGCCgCCGCCGCc- -3'
miRNA:   3'- -CCC-CUGgCGUCa----AGCGG-GGCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.