miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 293 0.66 0.717093
Target:  5'- gGGGGGCCaggGCAGcccaCGCCCUccggccuccucuGCCGCc- -3'
miRNA:   3'- -CCCCUGG---CGUCaa--GCGGGG------------CGGCGac -5'
8967 5' -63 NC_002512.2 + 2177 0.79 0.138716
Target:  5'- cGGGGACCGUAccgCGcCCCCGCCGCc- -3'
miRNA:   3'- -CCCCUGGCGUcaaGC-GGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 2456 0.7 0.485097
Target:  5'- aGGuGACCGCGGccCGCgCCCGCgCGCg- -3'
miRNA:   3'- cCC-CUGGCGUCaaGCG-GGGCG-GCGac -5'
8967 5' -63 NC_002512.2 + 3256 0.68 0.585564
Target:  5'- -cGGuCCGCGGgcUCgGUCCCGUCGCUGc -3'
miRNA:   3'- ccCCuGGCGUCa-AG-CGGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 4044 0.67 0.661108
Target:  5'- cGGGACaggaGCGGcUCGaucCCCCGCgGCUc -3'
miRNA:   3'- cCCCUGg---CGUCaAGC---GGGGCGgCGAc -5'
8967 5' -63 NC_002512.2 + 6356 0.69 0.539084
Target:  5'- cGGcGGGCCGCGGgcgcgUGCCguucuCCGCCGUg- -3'
miRNA:   3'- -CC-CCUGGCGUCaa---GCGG-----GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 7458 0.68 0.594966
Target:  5'- gGGGGaaGCCGCGGcgCGgcugccggcCCCCGCCGa-- -3'
miRNA:   3'- -CCCC--UGGCGUCaaGC---------GGGGCGGCgac -5'
8967 5' -63 NC_002512.2 + 9748 0.7 0.476345
Target:  5'- uGGGGGCgGCGGagcCGgaCCCGCCGCc- -3'
miRNA:   3'- -CCCCUGgCGUCaa-GCg-GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 10170 0.72 0.401446
Target:  5'- cGGGGGCCGCcucucgCGCCCCGagCGCc- -3'
miRNA:   3'- -CCCCUGGCGucaa--GCGGGGCg-GCGac -5'
8967 5' -63 NC_002512.2 + 10451 0.69 0.548292
Target:  5'- cGGGGGCgCGgAGgagGCCgCCGCCGCc- -3'
miRNA:   3'- -CCCCUG-GCgUCaagCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 10745 0.71 0.447196
Target:  5'- aGGuGGACaGCAGguagagcgcgucgUCgGCCCCGCCGCg- -3'
miRNA:   3'- -CC-CCUGgCGUCa------------AG-CGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 13380 0.68 0.623291
Target:  5'- uGGuGCCGCGGUUCGUCCgcuaccugacgCGCUGCg- -3'
miRNA:   3'- cCCcUGGCGUCAAGCGGG-----------GCGGCGac -5'
8967 5' -63 NC_002512.2 + 19190 0.68 0.623291
Target:  5'- cGGGuGAucucCCGCGG--CGCCuuGCCGUUGc -3'
miRNA:   3'- -CCC-CU----GGCGUCaaGCGGggCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 20242 0.7 0.483341
Target:  5'- aGGGGcacGCCGCAGccgucgucguccUCGUCCgGCCGCa- -3'
miRNA:   3'- -CCCC---UGGCGUCa-----------AGCGGGgCGGCGac -5'
8967 5' -63 NC_002512.2 + 23665 0.66 0.689283
Target:  5'- -uGGACCuGCGGUacuucaaGCCCCagcaccGCCGCUGc -3'
miRNA:   3'- ccCCUGG-CGUCAag-----CGGGG------CGGCGAC- -5'
8967 5' -63 NC_002512.2 + 23757 0.66 0.707876
Target:  5'- uGGcGACCGgA---CGCCCCGCUGCg- -3'
miRNA:   3'- cCC-CUGGCgUcaaGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 24481 0.66 0.726248
Target:  5'- aGGaGGcGCCGgAGUUcCGCUgCGCCGCc- -3'
miRNA:   3'- -CC-CC-UGGCgUCAA-GCGGgGCGGCGac -5'
8967 5' -63 NC_002512.2 + 25179 0.66 0.717093
Target:  5'- cGGGcCCGCcGUcgccgacgUCGCgUCCGCCGCg- -3'
miRNA:   3'- cCCCuGGCGuCA--------AGCG-GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 27457 0.66 0.744343
Target:  5'- uGGGGAcuCCGCGGgucaCGCCacuguuCCGCgCGCg- -3'
miRNA:   3'- -CCCCU--GGCGUCaa--GCGG------GGCG-GCGac -5'
8967 5' -63 NC_002512.2 + 28030 0.66 0.743446
Target:  5'- -cGGACCGCAG---GCCCCaggcgagcugccgGCCGCg- -3'
miRNA:   3'- ccCCUGGCGUCaagCGGGG-------------CGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.