miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 34890 0.68 0.585564
Target:  5'- cGGGACCGCcg-UCGCCCucuugCGCCGa-- -3'
miRNA:   3'- cCCCUGGCGucaAGCGGG-----GCGGCgac -5'
8967 5' -63 NC_002512.2 + 37270 0.66 0.735334
Target:  5'- aGGuGaGGCCGCcg-UCG-CCCGCCGCg- -3'
miRNA:   3'- -CC-C-CUGGCGucaAGCgGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 37737 0.72 0.370646
Target:  5'- aGGGGCCGCGGgaucUgGCCCgCGCCgaagaaGCUGa -3'
miRNA:   3'- cCCCUGGCGUCa---AgCGGG-GCGG------CGAC- -5'
8967 5' -63 NC_002512.2 + 38927 0.66 0.689283
Target:  5'- aGGGGccGCCGCGGcgggCGCCCgCGUgCGCc- -3'
miRNA:   3'- -CCCC--UGGCGUCaa--GCGGG-GCG-GCGac -5'
8967 5' -63 NC_002512.2 + 40948 0.66 0.689283
Target:  5'- aGGGaaccGACCGCcg--CGCCCCGCCa--- -3'
miRNA:   3'- -CCC----CUGGCGucaaGCGGGGCGGcgac -5'
8967 5' -63 NC_002512.2 + 44682 0.72 0.385843
Target:  5'- cGGGccACCGCGGcgUCGaCCgCCGCCGCg- -3'
miRNA:   3'- cCCC--UGGCGUCa-AGC-GG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 44985 0.67 0.679923
Target:  5'- aGGGGCaGUAG--CGCCgCCGCcCGCUGa -3'
miRNA:   3'- cCCCUGgCGUCaaGCGG-GGCG-GCGAC- -5'
8967 5' -63 NC_002512.2 + 45333 0.66 0.698603
Target:  5'- cGGaGGGCCGUccgccGGccCGCgCCGCCgGCUGa -3'
miRNA:   3'- -CC-CCUGGCG-----UCaaGCGgGGCGG-CGAC- -5'
8967 5' -63 NC_002512.2 + 45711 0.68 0.623291
Target:  5'- cGGGGuaguugaagaCGCAGaaacUCuCCCCGCUGCUGu -3'
miRNA:   3'- -CCCCug--------GCGUCa---AGcGGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 47618 0.66 0.698603
Target:  5'- -cGGACgUGCAGUUCcccguccugGCgCCGUCGCUGu -3'
miRNA:   3'- ccCCUG-GCGUCAAG---------CGgGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 47696 0.69 0.520832
Target:  5'- cGGGGG-CGguGUUCGCCauccugcgCGCCGCc- -3'
miRNA:   3'- -CCCCUgGCguCAAGCGGg-------GCGGCGac -5'
8967 5' -63 NC_002512.2 + 48289 0.66 0.735334
Target:  5'- aGGaGGACguCGCGGacccgcCGCCCCuGCCGCc- -3'
miRNA:   3'- -CC-CCUG--GCGUCaa----GCGGGG-CGGCGac -5'
8967 5' -63 NC_002512.2 + 49231 0.7 0.459081
Target:  5'- cGGGGccACCGCGG--CGgCCUGCCGCa- -3'
miRNA:   3'- -CCCC--UGGCGUCaaGCgGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 49499 0.68 0.594966
Target:  5'- aGGGA--GCGGUUCGUCCCcCCGCa- -3'
miRNA:   3'- cCCCUggCGUCAAGCGGGGcGGCGac -5'
8967 5' -63 NC_002512.2 + 50566 0.67 0.679923
Target:  5'- cGGcGCUGCAGgaucugccCGCCUCGCCGCc- -3'
miRNA:   3'- cCCcUGGCGUCaa------GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 55381 0.68 0.57619
Target:  5'- cGGGaacuGCUGCAGaaccccagCGCCCCGCCgagcgugccGCUGg -3'
miRNA:   3'- cCCC----UGGCGUCaa------GCGGGGCGG---------CGAC- -5'
8967 5' -63 NC_002512.2 + 56255 0.7 0.502826
Target:  5'- -cGGAcCCGgGGUUCGCCgCCGCgGCg- -3'
miRNA:   3'- ccCCU-GGCgUCAAGCGG-GGCGgCGac -5'
8967 5' -63 NC_002512.2 + 57174 0.66 0.744343
Target:  5'- cGGGuuGCCGCAGggCaCCUCGCgGCa- -3'
miRNA:   3'- cCCC--UGGCGUCaaGcGGGGCGgCGac -5'
8967 5' -63 NC_002512.2 + 60812 0.7 0.467672
Target:  5'- -cGGGCCGCGa--CGCCgCCGCCGCg- -3'
miRNA:   3'- ccCCUGGCGUcaaGCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 61725 0.66 0.738947
Target:  5'- cGGGGGCCGC-GUccccucUCcgccccccacccccaGCCCCucGCCGCg- -3'
miRNA:   3'- -CCCCUGGCGuCA------AG---------------CGGGG--CGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.