miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 107963 0.73 0.355863
Target:  5'- cGGGACCGCcgccgccUCGUCCCGCuCGCUc -3'
miRNA:   3'- cCCCUGGCGuca----AGCGGGGCG-GCGAc -5'
8967 5' -63 NC_002512.2 + 119587 0.72 0.363203
Target:  5'- cGGGuccccucgcGCCaGCAGUgUCGCCCuCGCCGCUc -3'
miRNA:   3'- cCCC---------UGG-CGUCA-AGCGGG-GCGGCGAc -5'
8967 5' -63 NC_002512.2 + 37737 0.72 0.370646
Target:  5'- aGGGGCCGCGGgaucUgGCCCgCGCCgaagaaGCUGa -3'
miRNA:   3'- cCCCUGGCGUCa---AgCGGG-GCGG------CGAC- -5'
8967 5' -63 NC_002512.2 + 94671 0.72 0.370646
Target:  5'- cGGGGCCGgGGggCcCCCCGgcCCGCUGg -3'
miRNA:   3'- cCCCUGGCgUCaaGcGGGGC--GGCGAC- -5'
8967 5' -63 NC_002512.2 + 44682 0.72 0.385843
Target:  5'- cGGGccACCGCGGcgUCGaCCgCCGCCGCg- -3'
miRNA:   3'- cCCC--UGGCGUCa-AGC-GG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 215089 0.72 0.393595
Target:  5'- cGGGACCGaGGacUUCGUCgCCGCCGCg- -3'
miRNA:   3'- cCCCUGGCgUC--AAGCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 10170 0.72 0.401446
Target:  5'- cGGGGGCCGCcucucgCGCCCCGagCGCc- -3'
miRNA:   3'- -CCCCUGGCGucaa--GCGGGGCg-GCGac -5'
8967 5' -63 NC_002512.2 + 94973 0.71 0.409397
Target:  5'- aGGuGGCUGCGGaUCGCCCCGUCGa-- -3'
miRNA:   3'- cCC-CUGGCGUCaAGCGGGGCGGCgac -5'
8967 5' -63 NC_002512.2 + 96289 0.71 0.409397
Target:  5'- gGGGGcuGCCGCGG---GCCgCCGCCGCg- -3'
miRNA:   3'- -CCCC--UGGCGUCaagCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 222421 0.71 0.409397
Target:  5'- cGGGGGCCgGCAGc-CGCgCCGCgGCUu -3'
miRNA:   3'- -CCCCUGG-CGUCaaGCGgGGCGgCGAc -5'
8967 5' -63 NC_002512.2 + 134759 0.71 0.432998
Target:  5'- gGGcGGACCGUccGGUUCGUcggcgggCCCGCCGUc- -3'
miRNA:   3'- -CC-CCUGGCG--UCAAGCG-------GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 220132 0.71 0.433826
Target:  5'- cGGGGCgGCGGgUCcgGCUCCGCCGCc- -3'
miRNA:   3'- cCCCUGgCGUCaAG--CGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 187294 0.71 0.433826
Target:  5'- -cGGGCUuCGGgucCGCCCCGCCGCUc -3'
miRNA:   3'- ccCCUGGcGUCaa-GCGGGGCGGCGAc -5'
8967 5' -63 NC_002512.2 + 140203 0.71 0.442156
Target:  5'- --cGACCGUAcaucUCGCCCCGCCGCc- -3'
miRNA:   3'- cccCUGGCGUca--AGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 10745 0.71 0.447196
Target:  5'- aGGuGGACaGCAGguagagcgcgucgUCgGCCCCGCCGCg- -3'
miRNA:   3'- -CC-CCUGgCGUCa------------AG-CGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 193002 0.7 0.459081
Target:  5'- -uGGACCGCGGgcgcCGCCCUGCCcacCUGc -3'
miRNA:   3'- ccCCUGGCGUCaa--GCGGGGCGGc--GAC- -5'
8967 5' -63 NC_002512.2 + 121458 0.7 0.459081
Target:  5'- aGGGGuCCGCcc--CGCgCCCGCCGCc- -3'
miRNA:   3'- -CCCCuGGCGucaaGCG-GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 49231 0.7 0.459081
Target:  5'- cGGGGccACCGCGG--CGgCCUGCCGCa- -3'
miRNA:   3'- -CCCC--UGGCGUCaaGCgGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 202290 0.7 0.459081
Target:  5'- uGGGACCGgGGcgcCGUgCCGCCGCg- -3'
miRNA:   3'- cCCCUGGCgUCaa-GCGgGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 60812 0.7 0.467672
Target:  5'- -cGGGCCGCGa--CGCCgCCGCCGCg- -3'
miRNA:   3'- ccCCUGGCGUcaaGCGG-GGCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.