miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 127409 0.66 0.726248
Target:  5'- cGGGACCGCcaccgcgacgGGcgCGCCCUccuCCGCg- -3'
miRNA:   3'- cCCCUGGCG----------UCaaGCGGGGc--GGCGac -5'
8967 5' -63 NC_002512.2 + 99659 0.66 0.726248
Target:  5'- cGGGGCC-CAGagguuCCCCGCCGCc- -3'
miRNA:   3'- cCCCUGGcGUCaagc-GGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 137082 0.66 0.717093
Target:  5'- cGGGAacaggcCCGCGGUgugCGCCCagGCgCGCg- -3'
miRNA:   3'- cCCCU------GGCGUCAa--GCGGGg-CG-GCGac -5'
8967 5' -63 NC_002512.2 + 108906 0.66 0.717093
Target:  5'- cGGGGCC-C-GUUCGCCggUGCUGCUGg -3'
miRNA:   3'- cCCCUGGcGuCAAGCGGg-GCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 105447 0.66 0.717093
Target:  5'- cGGGGuuccuCCGCAGgacguucgUCGUCCCG-UGCa- -3'
miRNA:   3'- -CCCCu----GGCGUCa-------AGCGGGGCgGCGac -5'
8967 5' -63 NC_002512.2 + 25179 0.66 0.717093
Target:  5'- cGGGcCCGCcGUcgccgacgUCGCgUCCGCCGCg- -3'
miRNA:   3'- cCCCuGGCGuCA--------AGCG-GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 133240 0.66 0.717093
Target:  5'- gGGaGGGCgGCGG--CGCCCCgGUCGCg- -3'
miRNA:   3'- -CC-CCUGgCGUCaaGCGGGG-CGGCGac -5'
8967 5' -63 NC_002512.2 + 229696 0.66 0.717093
Target:  5'- gGGGGGCCaggGCAGcccaCGCCCUccggccuccucuGCCGCc- -3'
miRNA:   3'- -CCCCUGG---CGUCaa--GCGGGG------------CGGCGac -5'
8967 5' -63 NC_002512.2 + 164261 0.66 0.717093
Target:  5'- cGGGGGCCGUcgGGUcgaUCGCCUCGg-GCUu -3'
miRNA:   3'- -CCCCUGGCG--UCA---AGCGGGGCggCGAc -5'
8967 5' -63 NC_002512.2 + 293 0.66 0.717093
Target:  5'- gGGGGGCCaggGCAGcccaCGCCCUccggccuccucuGCCGCc- -3'
miRNA:   3'- -CCCCUGG---CGUCaa--GCGGGG------------CGGCGac -5'
8967 5' -63 NC_002512.2 + 100498 0.66 0.707876
Target:  5'- gGGGaGGCCGCGGUcgUCGagcaCCCGCaCGa-- -3'
miRNA:   3'- -CCC-CUGGCGUCA--AGCg---GGGCG-GCgac -5'
8967 5' -63 NC_002512.2 + 23757 0.66 0.707876
Target:  5'- uGGcGACCGgA---CGCCCCGCUGCg- -3'
miRNA:   3'- cCC-CUGGCgUcaaGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 73371 0.66 0.707876
Target:  5'- -cGGACCcCcg--CGCCCCGCCGCc- -3'
miRNA:   3'- ccCCUGGcGucaaGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 186768 0.66 0.707876
Target:  5'- gGGGGGUCGCGGUcUCGUuuucucagcuUCUGCCGCa- -3'
miRNA:   3'- -CCCCUGGCGUCA-AGCG----------GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 126457 0.66 0.707876
Target:  5'- cGGcGGCCGCcuuGUUCGCCgucgUCGUCGCg- -3'
miRNA:   3'- cCC-CUGGCGu--CAAGCGG----GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 174336 0.66 0.707876
Target:  5'- cGGGGGuCCGCcg--CGCCCuCGuCCGCc- -3'
miRNA:   3'- -CCCCU-GGCGucaaGCGGG-GC-GGCGac -5'
8967 5' -63 NC_002512.2 + 95031 0.66 0.705099
Target:  5'- gGGGGGCggucaggcugugcgUGUAGUagGCCuCCGCCGUc- -3'
miRNA:   3'- -CCCCUG--------------GCGUCAagCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 63887 0.66 0.705099
Target:  5'- cGGaGCCGUcgggagAGUUgacgaagaaccgacCGCCCCGCCGCa- -3'
miRNA:   3'- cCCcUGGCG------UCAA--------------GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 66006 0.66 0.698603
Target:  5'- uGGGGGucUCGCAG--CGCUCCGuCCGgUGg -3'
miRNA:   3'- -CCCCU--GGCGUCaaGCGGGGC-GGCgAC- -5'
8967 5' -63 NC_002512.2 + 112770 0.66 0.698603
Target:  5'- ---cGCCGCGGg--GCCCCguGCCGCUGu -3'
miRNA:   3'- ccccUGGCGUCaagCGGGG--CGGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.