miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 98583 0.66 0.698603
Target:  5'- -cGGGCgGCGGgUCGUCCgCGCUGCa- -3'
miRNA:   3'- ccCCUGgCGUCaAGCGGG-GCGGCGac -5'
8967 5' -63 NC_002512.2 + 66006 0.66 0.698603
Target:  5'- uGGGGGucUCGCAG--CGCUCCGuCCGgUGg -3'
miRNA:   3'- -CCCCU--GGCGUCaaGCGGGGC-GGCgAC- -5'
8967 5' -63 NC_002512.2 + 47618 0.66 0.698603
Target:  5'- -cGGACgUGCAGUUCcccguccugGCgCCGUCGCUGu -3'
miRNA:   3'- ccCCUG-GCGUCAAG---------CGgGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 45333 0.66 0.698603
Target:  5'- cGGaGGGCCGUccgccGGccCGCgCCGCCgGCUGa -3'
miRNA:   3'- -CC-CCUGGCG-----UCaaGCGgGGCGG-CGAC- -5'
8967 5' -63 NC_002512.2 + 141432 0.66 0.697673
Target:  5'- aGGGGACU-------GCCCCGCCuGCUGg -3'
miRNA:   3'- -CCCCUGGcgucaagCGGGGCGG-CGAC- -5'
8967 5' -63 NC_002512.2 + 102886 0.66 0.689283
Target:  5'- gGGGGACC-CGGguaCGaCCCG-CGCUGg -3'
miRNA:   3'- -CCCCUGGcGUCaa-GCgGGGCgGCGAC- -5'
8967 5' -63 NC_002512.2 + 133879 0.66 0.689283
Target:  5'- cGGGGcguuccGCCugGCGGUcgcggCGCCggacgccgaCCGCCGCUGc -3'
miRNA:   3'- -CCCC------UGG--CGUCAa----GCGG---------GGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 155427 0.66 0.689283
Target:  5'- cGGGAgugccCCGUcGUcgUGuCCCCGCUGCUGa -3'
miRNA:   3'- cCCCU-----GGCGuCAa-GC-GGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 222232 0.66 0.689283
Target:  5'- cGGGGCCGCGuccUUCGUCgCCGUgGCg- -3'
miRNA:   3'- cCCCUGGCGUc--AAGCGG-GGCGgCGac -5'
8967 5' -63 NC_002512.2 + 38927 0.66 0.689283
Target:  5'- aGGGGccGCCGCGGcgggCGCCCgCGUgCGCc- -3'
miRNA:   3'- -CCCC--UGGCGUCaa--GCGGG-GCG-GCGac -5'
8967 5' -63 NC_002512.2 + 40948 0.66 0.689283
Target:  5'- aGGGaaccGACCGCcg--CGCCCCGCCa--- -3'
miRNA:   3'- -CCC----CUGGCGucaaGCGGGGCGGcgac -5'
8967 5' -63 NC_002512.2 + 23665 0.66 0.689283
Target:  5'- -uGGACCuGCGGUacuucaaGCCCCagcaccGCCGCUGc -3'
miRNA:   3'- ccCCUGG-CGUCAag-----CGGGG------CGGCGAC- -5'
8967 5' -63 NC_002512.2 + 107223 0.67 0.679923
Target:  5'- cGGGGAgCCGCGGUcaccgUCGUCCgGCucgaaaCGCa- -3'
miRNA:   3'- -CCCCU-GGCGUCA-----AGCGGGgCG------GCGac -5'
8967 5' -63 NC_002512.2 + 96893 0.67 0.679923
Target:  5'- cGGGGGCCG-GGUUC-CCCUGCUaCUa -3'
miRNA:   3'- -CCCCUGGCgUCAAGcGGGGCGGcGAc -5'
8967 5' -63 NC_002512.2 + 121772 0.67 0.679923
Target:  5'- cGGGACCGCGGacCGCCgaggcggggaCGCCGaaGa -3'
miRNA:   3'- cCCCUGGCGUCaaGCGGg---------GCGGCgaC- -5'
8967 5' -63 NC_002512.2 + 50566 0.67 0.679923
Target:  5'- cGGcGCUGCAGgaucugccCGCCUCGCCGCc- -3'
miRNA:   3'- cCCcUGGCGUCaa------GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 44985 0.67 0.679923
Target:  5'- aGGGGCaGUAG--CGCCgCCGCcCGCUGa -3'
miRNA:   3'- cCCCUGgCGUCaaGCGG-GGCG-GCGAC- -5'
8967 5' -63 NC_002512.2 + 218593 0.67 0.670529
Target:  5'- -cGGAUCGCAacUCGUCCCGCUGUg- -3'
miRNA:   3'- ccCCUGGCGUcaAGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 93378 0.67 0.670529
Target:  5'- aGGGGaucggGCCGCAGggCGCgCCGaaCGCg- -3'
miRNA:   3'- -CCCC-----UGGCGUCaaGCGgGGCg-GCGac -5'
8967 5' -63 NC_002512.2 + 149178 0.67 0.670529
Target:  5'- cGGGcCCGCGcgcccUCGCCCCccggacGCCGCUc -3'
miRNA:   3'- cCCCuGGCGUca---AGCGGGG------CGGCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.