miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 205582 0.97 0.007925
Target:  5'- gGGGGA-CGCAGUUCGCCCCGCCGCUGu -3'
miRNA:   3'- -CCCCUgGCGUCAAGCGGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 211788 0.81 0.106431
Target:  5'- cGGGuGGCCGCGGgggcCGUCCCGCCGCg- -3'
miRNA:   3'- -CCC-CUGGCGUCaa--GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 2177 0.79 0.138716
Target:  5'- cGGGGACCGUAccgCGcCCCCGCCGCc- -3'
miRNA:   3'- -CCCCUGGCGUcaaGC-GGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 139429 0.78 0.167604
Target:  5'- cGGGGAcCCGCAGcUgGCCCgGCCGCc- -3'
miRNA:   3'- -CCCCU-GGCGUCaAgCGGGgCGGCGac -5'
8967 5' -63 NC_002512.2 + 70895 0.76 0.211209
Target:  5'- cGGGGCCGCcgccucCGCCCCGCCGUg- -3'
miRNA:   3'- cCCCUGGCGucaa--GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 83163 0.76 0.231229
Target:  5'- cGGcGGCCGCGGccgcCGCCCCGCCGUc- -3'
miRNA:   3'- cCC-CUGGCGUCaa--GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 103099 0.75 0.241827
Target:  5'- cGGGGACgggCGCGGcacgcgUCGCCgCCGCCGCc- -3'
miRNA:   3'- -CCCCUG---GCGUCa-----AGCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 154931 0.75 0.241827
Target:  5'- gGGcGGACCGCuc-UCGUCCCGUCGCUc -3'
miRNA:   3'- -CC-CCUGGCGucaAGCGGGGCGGCGAc -5'
8967 5' -63 NC_002512.2 + 192576 0.75 0.252826
Target:  5'- cGGGGCCucggaGCGGacCGUCCCGCUGCUGc -3'
miRNA:   3'- cCCCUGG-----CGUCaaGCGGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 70730 0.75 0.252826
Target:  5'- gGGGGACgGgAGcgCGCCCgGCCGCc- -3'
miRNA:   3'- -CCCCUGgCgUCaaGCGGGgCGGCGac -5'
8967 5' -63 NC_002512.2 + 220795 0.75 0.258478
Target:  5'- uGGGGAucguccucgacCCGCucgUgGUCCCGCCGCUGg -3'
miRNA:   3'- -CCCCU-----------GGCGucaAgCGGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 149232 0.75 0.264233
Target:  5'- cGGGACCGaCGGacccggCGCCgCCGCCGCg- -3'
miRNA:   3'- cCCCUGGC-GUCaa----GCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 87981 0.75 0.264233
Target:  5'- cGGGGCCGCGG--CGCCCCGaCGCg- -3'
miRNA:   3'- cCCCUGGCGUCaaGCGGGGCgGCGac -5'
8967 5' -63 NC_002512.2 + 131040 0.75 0.270092
Target:  5'- cGGGGCCGCGGgggaggacggCGCCgCGCCGgaGg -3'
miRNA:   3'- cCCCUGGCGUCaa--------GCGGgGCGGCgaC- -5'
8967 5' -63 NC_002512.2 + 129187 0.75 0.270092
Target:  5'- cGGGGacGCUGCGGaggagGCCgCCGCCGCUGg -3'
miRNA:   3'- -CCCC--UGGCGUCaag--CGG-GGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 94080 0.74 0.282122
Target:  5'- cGGGACCGUcgg-CGuCCCCGCCGCg- -3'
miRNA:   3'- cCCCUGGCGucaaGC-GGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 154591 0.74 0.294573
Target:  5'- aGGGcGACgGCGGcaucgUCGCCgCCGCCGCc- -3'
miRNA:   3'- -CCC-CUGgCGUCa----AGCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 88668 0.74 0.294573
Target:  5'- cGGGGACCGCccgaaccCGCCCCgGCUGCg- -3'
miRNA:   3'- -CCCCUGGCGucaa---GCGGGG-CGGCGac -5'
8967 5' -63 NC_002512.2 + 215706 0.74 0.300958
Target:  5'- cGGGGACCGCAuccCGCUCUGcCCGCa- -3'
miRNA:   3'- -CCCCUGGCGUcaaGCGGGGC-GGCGac -5'
8967 5' -63 NC_002512.2 + 150070 0.73 0.334476
Target:  5'- gGGGGACCGC----CGCCgCCGCCGUc- -3'
miRNA:   3'- -CCCCUGGCGucaaGCGG-GGCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.