miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 229696 0.66 0.717093
Target:  5'- gGGGGGCCaggGCAGcccaCGCCCUccggccuccucuGCCGCc- -3'
miRNA:   3'- -CCCCUGG---CGUCaa--GCGGGG------------CGGCGac -5'
8967 5' -63 NC_002512.2 + 227439 0.69 0.557549
Target:  5'- -cGGGCCGCGGUcaccuUCGCgCUGCCGggGg -3'
miRNA:   3'- ccCCUGGCGUCA-----AGCGgGGCGGCgaC- -5'
8967 5' -63 NC_002512.2 + 227189 0.68 0.594966
Target:  5'- gGGGGAgCgGCAGg-CGCuCCCGCgCGCg- -3'
miRNA:   3'- -CCCCU-GgCGUCaaGCG-GGGCG-GCGac -5'
8967 5' -63 NC_002512.2 + 224979 0.67 0.642213
Target:  5'- uGGGcGGCgGCGGcggCGCCCucuucccguCGCCGCUc -3'
miRNA:   3'- -CCC-CUGgCGUCaa-GCGGG---------GCGGCGAc -5'
8967 5' -63 NC_002512.2 + 224931 0.68 0.604392
Target:  5'- cGGGGACCGgguccgugcCGGUgucgcUCgGCUCCGCCGUc- -3'
miRNA:   3'- -CCCCUGGC---------GUCA-----AG-CGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 224715 0.68 0.604392
Target:  5'- uGGGGccgGCCGC----CGCCCCggucgcGCCGCUGc -3'
miRNA:   3'- -CCCC---UGGCGucaaGCGGGG------CGGCGAC- -5'
8967 5' -63 NC_002512.2 + 222421 0.71 0.409397
Target:  5'- cGGGGGCCgGCAGc-CGCgCCGCgGCUu -3'
miRNA:   3'- -CCCCUGG-CGUCaaGCGgGGCGgCGAc -5'
8967 5' -63 NC_002512.2 + 222232 0.66 0.689283
Target:  5'- cGGGGCCGCGuccUUCGUCgCCGUgGCg- -3'
miRNA:   3'- cCCCUGGCGUc--AAGCGG-GGCGgCGac -5'
8967 5' -63 NC_002512.2 + 220795 0.75 0.258478
Target:  5'- uGGGGAucguccucgacCCGCucgUgGUCCCGCCGCUGg -3'
miRNA:   3'- -CCCCU-----------GGCGucaAgCGGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 220388 0.69 0.56685
Target:  5'- uGGGGCCgGCcGUcgUCuaCCCGCCGCUc -3'
miRNA:   3'- cCCCUGG-CGuCA--AGcgGGGCGGCGAc -5'
8967 5' -63 NC_002512.2 + 220132 0.71 0.433826
Target:  5'- cGGGGCgGCGGgUCcgGCUCCGCCGCc- -3'
miRNA:   3'- cCCCUGgCGUCaAG--CGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 219388 0.67 0.651667
Target:  5'- uGGGcugccuCCGCuGgUCGgCCCGCCGCg- -3'
miRNA:   3'- cCCCu-----GGCGuCaAGCgGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 218993 0.66 0.744343
Target:  5'- cGGGGuCCGCAac-CGCCUCcuccagcacuGCUGCUGc -3'
miRNA:   3'- -CCCCuGGCGUcaaGCGGGG----------CGGCGAC- -5'
8967 5' -63 NC_002512.2 + 218593 0.67 0.670529
Target:  5'- -cGGAUCGCAacUCGUCCCGCUGUg- -3'
miRNA:   3'- ccCCUGGCGUcaAGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 218469 0.69 0.556621
Target:  5'- -cGGACCGCGGUcaucuccUCGUCCCGCgGg-- -3'
miRNA:   3'- ccCCUGGCGUCA-------AGCGGGGCGgCgac -5'
8967 5' -63 NC_002512.2 + 217942 0.66 0.741649
Target:  5'- uGGGGACCgggGCGGggaacgacugccuaUUUGCCgagCGCCGCUu -3'
miRNA:   3'- -CCCCUGG---CGUC--------------AAGCGGg--GCGGCGAc -5'
8967 5' -63 NC_002512.2 + 215706 0.74 0.300958
Target:  5'- cGGGGACCGCAuccCGCUCUGcCCGCa- -3'
miRNA:   3'- -CCCCUGGCGUcaaGCGGGGC-GGCGac -5'
8967 5' -63 NC_002512.2 + 215089 0.72 0.393595
Target:  5'- cGGGACCGaGGacUUCGUCgCCGCCGCg- -3'
miRNA:   3'- cCCCUGGCgUC--AAGCGG-GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 213049 0.69 0.539084
Target:  5'- gGGGGAUCG-AGaUCGCCCUGCCcaGCc- -3'
miRNA:   3'- -CCCCUGGCgUCaAGCGGGGCGG--CGac -5'
8967 5' -63 NC_002512.2 + 211788 0.81 0.106431
Target:  5'- cGGGuGGCCGCGGgggcCGUCCCGCCGCg- -3'
miRNA:   3'- -CCC-CUGGCGUCaa--GCGGGGCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.