miRNA display CGI


Results 1 - 20 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 218993 0.66 0.744343
Target:  5'- cGGGGuCCGCAac-CGCCUCcuccagcacuGCUGCUGc -3'
miRNA:   3'- -CCCCuGGCGUcaaGCGGGG----------CGGCGAC- -5'
8967 5' -63 NC_002512.2 + 120874 0.66 0.698603
Target:  5'- cGGGuCCGCAGgacgaCGCCgCCGgCGCc- -3'
miRNA:   3'- cCCCuGGCGUCaa---GCGG-GGCgGCGac -5'
8967 5' -63 NC_002512.2 + 155427 0.66 0.689283
Target:  5'- cGGGAgugccCCGUcGUcgUGuCCCCGCUGCUGa -3'
miRNA:   3'- cCCCU-----GGCGuCAa-GC-GGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 205582 0.97 0.007925
Target:  5'- gGGGGA-CGCAGUUCGCCCCGCCGCUGu -3'
miRNA:   3'- -CCCCUgGCGUCAAGCGGGGCGGCGAC- -5'
8967 5' -63 NC_002512.2 + 106305 0.66 0.744343
Target:  5'- --cGACCGCGGgcccgUCGUccagCCCGUCGCUc -3'
miRNA:   3'- cccCUGGCGUCa----AGCG----GGGCGGCGAc -5'
8967 5' -63 NC_002512.2 + 77535 0.66 0.744343
Target:  5'- cGGGACCGgAGa-CGCCUaCGUCGCg- -3'
miRNA:   3'- cCCCUGGCgUCaaGCGGG-GCGGCGac -5'
8967 5' -63 NC_002512.2 + 217942 0.66 0.741649
Target:  5'- uGGGGACCgggGCGGggaacgacugccuaUUUGCCgagCGCCGCUu -3'
miRNA:   3'- -CCCCUGG---CGUC--------------AAGCGGg--GCGGCGAc -5'
8967 5' -63 NC_002512.2 + 171906 0.66 0.726248
Target:  5'- cGGGACuCGgugauaGGUUCGUcgcccucuucgCCCGCCGCg- -3'
miRNA:   3'- cCCCUG-GCg-----UCAAGCG-----------GGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 164261 0.66 0.717093
Target:  5'- cGGGGGCCGUcgGGUcgaUCGCCUCGg-GCUu -3'
miRNA:   3'- -CCCCUGGCG--UCA---AGCGGGGCggCGAc -5'
8967 5' -63 NC_002512.2 + 100498 0.66 0.707876
Target:  5'- gGGGaGGCCGCGGUcgUCGagcaCCCGCaCGa-- -3'
miRNA:   3'- -CCC-CUGGCGUCA--AGCg---GGGCG-GCgac -5'
8967 5' -63 NC_002512.2 + 293 0.66 0.717093
Target:  5'- gGGGGGCCaggGCAGcccaCGCCCUccggccuccucuGCCGCc- -3'
miRNA:   3'- -CCCCUGG---CGUCaa--GCGGGG------------CGGCGac -5'
8967 5' -63 NC_002512.2 + 92520 0.66 0.726248
Target:  5'- cGGGaGACCGCgcGGaUCuaCCCGgCCGCg- -3'
miRNA:   3'- -CCC-CUGGCG--UCaAGcgGGGC-GGCGac -5'
8967 5' -63 NC_002512.2 + 192880 0.66 0.744343
Target:  5'- cGGGGACgcauauaagCGCcGUcgCGCUCCGCgGCg- -3'
miRNA:   3'- -CCCCUG---------GCGuCAa-GCGGGGCGgCGac -5'
8967 5' -63 NC_002512.2 + 126457 0.66 0.707876
Target:  5'- cGGcGGCCGCcuuGUUCGCCgucgUCGUCGCg- -3'
miRNA:   3'- cCC-CUGGCGu--CAAGCGG----GGCGGCGac -5'
8967 5' -63 NC_002512.2 + 183515 0.66 0.744343
Target:  5'- gGGGaGGCCGUcc-UCGCCUgGCUGCg- -3'
miRNA:   3'- -CCC-CUGGCGucaAGCGGGgCGGCGac -5'
8967 5' -63 NC_002512.2 + 155379 0.66 0.726248
Target:  5'- cGGGACCGCgaggcuggcgaGGUccucucCGUCCUGUCGCUc -3'
miRNA:   3'- cCCCUGGCG-----------UCAa-----GCGGGGCGGCGAc -5'
8967 5' -63 NC_002512.2 + 174336 0.66 0.707876
Target:  5'- cGGGGGuCCGCcg--CGCCCuCGuCCGCc- -3'
miRNA:   3'- -CCCCU-GGCGucaaGCGGG-GC-GGCGac -5'
8967 5' -63 NC_002512.2 + 222232 0.66 0.689283
Target:  5'- cGGGGCCGCGuccUUCGUCgCCGUgGCg- -3'
miRNA:   3'- cCCCUGGCGUc--AAGCGG-GGCGgCGac -5'
8967 5' -63 NC_002512.2 + 142620 0.66 0.744343
Target:  5'- --cGACCGCGuGUUCGCUCC-CCGgaGa -3'
miRNA:   3'- cccCUGGCGU-CAAGCGGGGcGGCgaC- -5'
8967 5' -63 NC_002512.2 + 75293 0.66 0.743446
Target:  5'- cGGcGGcgacgauGCCGCcg-UCGCCCuCGCCGUUa -3'
miRNA:   3'- -CC-CC-------UGGCGucaAGCGGG-GCGGCGAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.