miRNA display CGI


Results 41 - 60 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8967 5' -63 NC_002512.2 + 63887 0.66 0.705099
Target:  5'- cGGaGCCGUcgggagAGUUgacgaagaaccgacCGCCCCGCCGCa- -3'
miRNA:   3'- cCCcUGGCG------UCAA--------------GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 66006 0.66 0.698603
Target:  5'- uGGGGGucUCGCAG--CGCUCCGuCCGgUGg -3'
miRNA:   3'- -CCCCU--GGCGUCaaGCGGGGC-GGCgAC- -5'
8967 5' -63 NC_002512.2 + 67955 0.7 0.510896
Target:  5'- aGGGGuCgCGcCGGUUCGCCguggcguCCGCCGgaGg -3'
miRNA:   3'- -CCCCuG-GC-GUCAAGCGG-------GGCGGCgaC- -5'
8967 5' -63 NC_002512.2 + 70730 0.75 0.252826
Target:  5'- gGGGGACgGgAGcgCGCCCgGCCGCc- -3'
miRNA:   3'- -CCCCUGgCgUCaaGCGGGgCGGCGac -5'
8967 5' -63 NC_002512.2 + 70895 0.76 0.211209
Target:  5'- cGGGGCCGCcgccucCGCCCCGCCGUg- -3'
miRNA:   3'- cCCCUGGCGucaa--GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 73371 0.66 0.707876
Target:  5'- -cGGACCcCcg--CGCCCCGCCGCc- -3'
miRNA:   3'- ccCCUGGcGucaaGCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 75293 0.66 0.743446
Target:  5'- cGGcGGcgacgauGCCGCcg-UCGCCCuCGCCGUUa -3'
miRNA:   3'- -CC-CC-------UGGCGucaAGCGGG-GCGGCGAc -5'
8967 5' -63 NC_002512.2 + 76917 0.68 0.620454
Target:  5'- cGGGGACCGCucc-CGCCgacccgaccggggaCCGCuccCGCUGa -3'
miRNA:   3'- -CCCCUGGCGucaaGCGG--------------GGCG---GCGAC- -5'
8967 5' -63 NC_002512.2 + 76990 0.67 0.629914
Target:  5'- cGGGGACCGCucccGUUcaccgaccggggacCGCuCCCGCacaccgGCUGc -3'
miRNA:   3'- -CCCCUGGCGu---CAA--------------GCG-GGGCGg-----CGAC- -5'
8967 5' -63 NC_002512.2 + 77535 0.66 0.744343
Target:  5'- cGGGACCGgAGa-CGCCUaCGUCGCg- -3'
miRNA:   3'- cCCCUGGCgUCaaGCGGG-GCGGCGac -5'
8967 5' -63 NC_002512.2 + 80725 0.68 0.613836
Target:  5'- cGGGcCCGCGGgcggcaccgGCCCCGCgGCg- -3'
miRNA:   3'- cCCCuGGCGUCaag------CGGGGCGgCGac -5'
8967 5' -63 NC_002512.2 + 82325 0.7 0.476345
Target:  5'- -aGGGCCGCGGgcCGCCCCGgCGg-- -3'
miRNA:   3'- ccCCUGGCGUCaaGCGGGGCgGCgac -5'
8967 5' -63 NC_002512.2 + 83163 0.76 0.231229
Target:  5'- cGGcGGCCGCGGccgcCGCCCCGCCGUc- -3'
miRNA:   3'- cCC-CUGGCGUCaa--GCGGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 87981 0.75 0.264233
Target:  5'- cGGGGCCGCGG--CGCCCCGaCGCg- -3'
miRNA:   3'- cCCCUGGCGUCaaGCGGGGCgGCGac -5'
8967 5' -63 NC_002512.2 + 88668 0.74 0.294573
Target:  5'- cGGGGACCGCccgaaccCGCCCCgGCUGCg- -3'
miRNA:   3'- -CCCCUGGCGucaa---GCGGGG-CGGCGac -5'
8967 5' -63 NC_002512.2 + 92520 0.66 0.726248
Target:  5'- cGGGaGACCGCgcGGaUCuaCCCGgCCGCg- -3'
miRNA:   3'- -CCC-CUGGCG--UCaAGcgGGGC-GGCGac -5'
8967 5' -63 NC_002512.2 + 93378 0.67 0.670529
Target:  5'- aGGGGaucggGCCGCAGggCGCgCCGaaCGCg- -3'
miRNA:   3'- -CCCC-----UGGCGUCaaGCGgGGCg-GCGac -5'
8967 5' -63 NC_002512.2 + 94080 0.74 0.282122
Target:  5'- cGGGACCGUcgg-CGuCCCCGCCGCg- -3'
miRNA:   3'- cCCCUGGCGucaaGC-GGGGCGGCGac -5'
8967 5' -63 NC_002512.2 + 94296 0.69 0.539084
Target:  5'- cGGGGAgCGgucguccaccCGGUUgCGCCCCGgCGCg- -3'
miRNA:   3'- -CCCCUgGC----------GUCAA-GCGGGGCgGCGac -5'
8967 5' -63 NC_002512.2 + 94538 0.68 0.604392
Target:  5'- gGGGGACCGCcGUUC-CagCGCCGUg- -3'
miRNA:   3'- -CCCCUGGCGuCAAGcGggGCGGCGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.