miRNA display CGI


Results 41 - 60 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 3' -58.9 NC_002512.2 + 7568 0.67 0.792947
Target:  5'- cGCCgCCGCAgCCUccgguACCGCCUCCggcGGc -3'
miRNA:   3'- uUGGaGGUGU-GGA-----UGGCGGAGGa--CCu -5'
8968 3' -58.9 NC_002512.2 + 113678 0.67 0.792947
Target:  5'- cACCUUCGuCAgCUcgACCGCCUgCCUGGc -3'
miRNA:   3'- uUGGAGGU-GUgGA--UGGCGGA-GGACCu -5'
8968 3' -58.9 NC_002512.2 + 201806 0.67 0.792947
Target:  5'- cGACCUCUcCGCCgucuCCGCCgcgCCcGGGg -3'
miRNA:   3'- -UUGGAGGuGUGGau--GGCGGa--GGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 215677 0.67 0.792947
Target:  5'- cGCUUCCGuCACCgGCUGCCcUUCUGGu -3'
miRNA:   3'- uUGGAGGU-GUGGaUGGCGG-AGGACCu -5'
8968 3' -58.9 NC_002512.2 + 219161 0.67 0.792071
Target:  5'- cACCUCCGCcgaggacuucgccGCCgucggcUACCGCUUCCUGu- -3'
miRNA:   3'- uUGGAGGUG-------------UGG------AUGGCGGAGGACcu -5'
8968 3' -58.9 NC_002512.2 + 142319 0.67 0.784123
Target:  5'- aAAUCUCuCACauaACCgauggaaACCGcCCUCCUGGAc -3'
miRNA:   3'- -UUGGAG-GUG---UGGa------UGGC-GGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 121909 0.67 0.784123
Target:  5'- cGACCuUCUGCGCCU-UCGCCcuggcCCUGGAc -3'
miRNA:   3'- -UUGG-AGGUGUGGAuGGCGGa----GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 145247 0.67 0.784123
Target:  5'- gAACUUCCugG---GCCGCCgCCUGGAc -3'
miRNA:   3'- -UUGGAGGugUggaUGGCGGaGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 7536 0.67 0.784123
Target:  5'- cGGCCccgugCCGCuCCU-CCuCCUCCUGGAg -3'
miRNA:   3'- -UUGGa----GGUGuGGAuGGcGGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 144339 0.67 0.783233
Target:  5'- cGCCUCCucgagccccgccaGCGCCgucaugACCGCCgUCCUGu- -3'
miRNA:   3'- uUGGAGG-------------UGUGGa-----UGGCGG-AGGACcu -5'
8968 3' -58.9 NC_002512.2 + 36190 0.68 0.775171
Target:  5'- cGACCUCCAUcgucccCCgggACCGacugcgggagcCCUCCUGGGu -3'
miRNA:   3'- -UUGGAGGUGu-----GGa--UGGC-----------GGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 219375 0.68 0.775171
Target:  5'- cGCCUCUGCucCCUggGCUGCCUCCgcUGGu -3'
miRNA:   3'- uUGGAGGUGu-GGA--UGGCGGAGG--ACCu -5'
8968 3' -58.9 NC_002512.2 + 145909 0.68 0.7661
Target:  5'- cGACCgccCCGCGCCgggcauCCGCCgCCgGGAc -3'
miRNA:   3'- -UUGGa--GGUGUGGau----GGCGGaGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 154975 0.68 0.7661
Target:  5'- cGCCUCCGgGCCU-CCGCgUCCgucgcgacgaGGAu -3'
miRNA:   3'- uUGGAGGUgUGGAuGGCGgAGGa---------CCU- -5'
8968 3' -58.9 NC_002512.2 + 216382 0.68 0.7661
Target:  5'- cAGCUUCCugGCC-GCCGUCUCCg--- -3'
miRNA:   3'- -UUGGAGGugUGGaUGGCGGAGGaccu -5'
8968 3' -58.9 NC_002512.2 + 106832 0.68 0.7661
Target:  5'- cGACCUCCucuucCGCC-AUCGCCUCCUc-- -3'
miRNA:   3'- -UUGGAGGu----GUGGaUGGCGGAGGAccu -5'
8968 3' -58.9 NC_002512.2 + 119001 0.68 0.7661
Target:  5'- uGGCCUCCGC-CaagcGCCuCCUCCUGGu -3'
miRNA:   3'- -UUGGAGGUGuGga--UGGcGGAGGACCu -5'
8968 3' -58.9 NC_002512.2 + 18121 0.68 0.7661
Target:  5'- gGGCCUCCACGuCCUcCCGCagcgCCcGGGc -3'
miRNA:   3'- -UUGGAGGUGU-GGAuGGCGga--GGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 8810 0.68 0.7661
Target:  5'- -cCC-CCACGCCguuccGCCGCCggagCUUGGGc -3'
miRNA:   3'- uuGGaGGUGUGGa----UGGCGGa---GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 64469 0.68 0.756919
Target:  5'- cGAUCUCgUAgGCCcGCCGgcCCUCCUGGAc -3'
miRNA:   3'- -UUGGAG-GUgUGGaUGGC--GGAGGACCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.