miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 3' -58.9 NC_002512.2 + 194610 0.66 0.858049
Target:  5'- -cCCUCCGcCGCCgcgGCCGUCgCCgcgGGGg -3'
miRNA:   3'- uuGGAGGU-GUGGa--UGGCGGaGGa--CCU- -5'
8968 3' -58.9 NC_002512.2 + 137997 0.66 0.858049
Target:  5'- gGGCCgugcgCCGCGCC-GCCGCCcgcgCC-GGAc -3'
miRNA:   3'- -UUGGa----GGUGUGGaUGGCGGa---GGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 223475 0.66 0.858049
Target:  5'- cGCCUUCcccaGCGCCgccGCCGCCUCCcUGc- -3'
miRNA:   3'- uUGGAGG----UGUGGa--UGGCGGAGG-ACcu -5'
8968 3' -58.9 NC_002512.2 + 211810 0.66 0.858049
Target:  5'- cGCCgcggCGCACCUAuuUCGaCUUCCUGGAc -3'
miRNA:   3'- uUGGag--GUGUGGAU--GGC-GGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 40955 0.66 0.850512
Target:  5'- cGACCgCCGCGCC--CCGCCaCCgGGAc -3'
miRNA:   3'- -UUGGaGGUGUGGauGGCGGaGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 99208 0.66 0.850512
Target:  5'- aGAUCUCCGCGgCcGCCGCCgUgUGGGu -3'
miRNA:   3'- -UUGGAGGUGUgGaUGGCGGaGgACCU- -5'
8968 3' -58.9 NC_002512.2 + 106722 0.66 0.850512
Target:  5'- uGACCg-CGCuCCUGuCCGCCUCCUcGGc -3'
miRNA:   3'- -UUGGagGUGuGGAU-GGCGGAGGA-CCu -5'
8968 3' -58.9 NC_002512.2 + 112814 0.66 0.842789
Target:  5'- cACCUCCAgCGCCUGCgCGUgCUCC-GGc -3'
miRNA:   3'- uUGGAGGU-GUGGAUG-GCG-GAGGaCCu -5'
8968 3' -58.9 NC_002512.2 + 214477 0.66 0.834888
Target:  5'- uGCUUCCACcgcggcgUCUuCCGCCUCCUGcGGa -3'
miRNA:   3'- uUGGAGGUGu------GGAuGGCGGAGGAC-CU- -5'
8968 3' -58.9 NC_002512.2 + 149950 0.66 0.834089
Target:  5'- gGACCcCCGCGCCgccuCgGCCUucgagcccuucacCCUGGAc -3'
miRNA:   3'- -UUGGaGGUGUGGau--GgCGGA-------------GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 113630 0.67 0.826816
Target:  5'- gGugCUCCgcaGCACCUGCagggugGCCUCgUGGu -3'
miRNA:   3'- -UugGAGG---UGUGGAUGg-----CGGAGgACCu -5'
8968 3' -58.9 NC_002512.2 + 137921 0.67 0.818578
Target:  5'- -cCCUCCGgACgUGCCGCUccgcCCUGGc -3'
miRNA:   3'- uuGGAGGUgUGgAUGGCGGa---GGACCu -5'
8968 3' -58.9 NC_002512.2 + 197231 0.67 0.810183
Target:  5'- uGCCUcaaCCGCAUCUACCGCCUggCCg--- -3'
miRNA:   3'- uUGGA---GGUGUGGAUGGCGGA--GGaccu -5'
8968 3' -58.9 NC_002512.2 + 135350 0.67 0.810183
Target:  5'- gGugCUgCugGCCgucgACCGCUucgUCCUGGGc -3'
miRNA:   3'- -UugGAgGugUGGa---UGGCGG---AGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 117305 0.67 0.810183
Target:  5'- -uCCUCUACGCCcucaccgucUACCGCCUCUa--- -3'
miRNA:   3'- uuGGAGGUGUGG---------AUGGCGGAGGaccu -5'
8968 3' -58.9 NC_002512.2 + 96963 0.67 0.810183
Target:  5'- cGCCaUCCAcCACCUgacGCCGCaccuguaCCUGGAc -3'
miRNA:   3'- uUGG-AGGU-GUGGA---UGGCGga-----GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 3013 0.67 0.801636
Target:  5'- gGGCCuUCCugGCCUcCCggGCCUcCCUGGc -3'
miRNA:   3'- -UUGG-AGGugUGGAuGG--CGGA-GGACCu -5'
8968 3' -58.9 NC_002512.2 + 101175 0.67 0.801636
Target:  5'- cAGCCUCCACACCUGCCcgaaggaCC-CCUu-- -3'
miRNA:   3'- -UUGGAGGUGUGGAUGGc------GGaGGAccu -5'
8968 3' -58.9 NC_002512.2 + 155487 0.67 0.801636
Target:  5'- aGACggCCAUGgCcGCCGCuCUCCUGGAa -3'
miRNA:   3'- -UUGgaGGUGUgGaUGGCG-GAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 41111 0.67 0.792947
Target:  5'- aGGCCggagCCGCcGCCggaACCGCC-CUUGGAc -3'
miRNA:   3'- -UUGGa---GGUG-UGGa--UGGCGGaGGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.