Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8968 | 3' | -58.9 | NC_002512.2 | + | 137334 | 0.66 | 0.864671 |
Target: 5'- cGCCUCCGacgucguCGCCgcgGCCGCCgcggCCgGGu -3' miRNA: 3'- uUGGAGGU-------GUGGa--UGGCGGa---GGaCCu -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 131072 | 0.66 | 0.865397 |
Target: 5'- aGGCCgaUCCGuCGCUccgGCCGCCgggguaCCUGGAc -3' miRNA: 3'- -UUGG--AGGU-GUGGa--UGGCGGa-----GGACCU- -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 97914 | 0.66 | 0.872549 |
Target: 5'- cGACCUCguucuuCGCCUACCGCgaUCCgccGGGc -3' miRNA: 3'- -UUGGAGgu----GUGGAUGGCGg-AGGa--CCU- -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 170889 | 0.66 | 0.872549 |
Target: 5'- --gCUCCuCGCCgACgGCCgCCUGGAc -3' miRNA: 3'- uugGAGGuGUGGaUGgCGGaGGACCU- -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 121465 | 0.66 | 0.872549 |
Target: 5'- cGCC-CCGCGCCcGCCGCCgUCCc--- -3' miRNA: 3'- uUGGaGGUGUGGaUGGCGG-AGGaccu -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 96656 | 0.66 | 0.872549 |
Target: 5'- cGCCgCCGC-CCUcCCGuCCUCgCUGGGc -3' miRNA: 3'- uUGGaGGUGuGGAuGGC-GGAG-GACCU- -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 196077 | 0.66 | 0.865397 |
Target: 5'- gGGCCUUCGC-CCUGCuCGCgCUCCUc-- -3' miRNA: 3'- -UUGGAGGUGuGGAUG-GCG-GAGGAccu -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 172312 | 0.66 | 0.865397 |
Target: 5'- uGACCcgCCAUACCU-UCGuCCUCCUGu- -3' miRNA: 3'- -UUGGa-GGUGUGGAuGGC-GGAGGACcu -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 96009 | 0.66 | 0.865397 |
Target: 5'- cGGCCgagCCGCuCCUcgaGCCGCC-CCaGGAc -3' miRNA: 3'- -UUGGa--GGUGuGGA---UGGCGGaGGaCCU- -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 48302 | 0.66 | 0.865397 |
Target: 5'- gGACCcgCCGCcCCUGCCGCCgCagacGGAc -3' miRNA: 3'- -UUGGa-GGUGuGGAUGGCGGaGga--CCU- -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 155487 | 0.67 | 0.801636 |
Target: 5'- aGACggCCAUGgCcGCCGCuCUCCUGGAa -3' miRNA: 3'- -UUGgaGGUGUgGaUGGCG-GAGGACCU- -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 113630 | 0.67 | 0.826816 |
Target: 5'- gGugCUCCgcaGCACCUGCagggugGCCUCgUGGu -3' miRNA: 3'- -UugGAGG---UGUGGAUGg-----CGGAGgACCu -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 135350 | 0.67 | 0.810183 |
Target: 5'- gGugCUgCugGCCgucgACCGCUucgUCCUGGGc -3' miRNA: 3'- -UugGAgGugUGGa---UGGCGG---AGGACCU- -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 117305 | 0.67 | 0.810183 |
Target: 5'- -uCCUCUACGCCcucaccgucUACCGCCUCUa--- -3' miRNA: 3'- uuGGAGGUGUGG---------AUGGCGGAGGaccu -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 3013 | 0.67 | 0.801636 |
Target: 5'- gGGCCuUCCugGCCUcCCggGCCUcCCUGGc -3' miRNA: 3'- -UUGG-AGGugUGGAuGG--CGGA-GGACCu -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 41111 | 0.67 | 0.792947 |
Target: 5'- aGGCCggagCCGCcGCCggaACCGCC-CUUGGAc -3' miRNA: 3'- -UUGGa---GGUG-UGGa--UGGCGGaGGACCU- -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 7568 | 0.67 | 0.792947 |
Target: 5'- cGCCgCCGCAgCCUccgguACCGCCUCCggcGGc -3' miRNA: 3'- uUGGaGGUGU-GGA-----UGGCGGAGGa--CCu -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 113678 | 0.67 | 0.792947 |
Target: 5'- cACCUUCGuCAgCUcgACCGCCUgCCUGGc -3' miRNA: 3'- uUGGAGGU-GUgGA--UGGCGGA-GGACCu -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 7536 | 0.67 | 0.784123 |
Target: 5'- cGGCCccgugCCGCuCCU-CCuCCUCCUGGAg -3' miRNA: 3'- -UUGGa----GGUGuGGAuGGcGGAGGACCU- -5' |
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8968 | 3' | -58.9 | NC_002512.2 | + | 137921 | 0.67 | 0.818578 |
Target: 5'- -cCCUCCGgACgUGCCGCUccgcCCUGGc -3' miRNA: 3'- uuGGAGGUgUGgAUGGCGGa---GGACCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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