miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 3' -58.9 NC_002512.2 + 170055 0.7 0.631199
Target:  5'- uGGCCgCCGcCGCCgcgGCCGCCuUCUUGGGc -3'
miRNA:   3'- -UUGGaGGU-GUGGa--UGGCGG-AGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 4352 0.7 0.632187
Target:  5'- -uCCUCCGCGCCUcCCGCCgUCCcguccgcgaagcccgGGAc -3'
miRNA:   3'- uuGGAGGUGUGGAuGGCGG-AGGa--------------CCU- -5'
8968 3' -58.9 NC_002512.2 + 46445 0.7 0.64108
Target:  5'- cGGCgUCCugACCguggGCCGCgCUugCCUGGAc -3'
miRNA:   3'- -UUGgAGGugUGGa---UGGCG-GA--GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 172395 0.7 0.650954
Target:  5'- uACCUgCACGCCgggaugACCGCCcggCUGGAg -3'
miRNA:   3'- uUGGAgGUGUGGa-----UGGCGGag-GACCU- -5'
8968 3' -58.9 NC_002512.2 + 157694 0.7 0.660814
Target:  5'- gGACUUCCGCGCCU-UCGCCUCggcGGGc -3'
miRNA:   3'- -UUGGAGGUGUGGAuGGCGGAGga-CCU- -5'
8968 3' -58.9 NC_002512.2 + 215838 0.7 0.660814
Target:  5'- cGGCCggaaCGCGCC-GCCGCCUUCgGGAa -3'
miRNA:   3'- -UUGGag--GUGUGGaUGGCGGAGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 85845 0.69 0.670652
Target:  5'- cGGCgCUCC-CGCCUagACCGCCUUCUGu- -3'
miRNA:   3'- -UUG-GAGGuGUGGA--UGGCGGAGGACcu -5'
8968 3' -58.9 NC_002512.2 + 215483 0.69 0.689258
Target:  5'- -uCCUCCugGCGCCUGCucuacuuCGCCUCCgUGGu -3'
miRNA:   3'- uuGGAGG--UGUGGAUG-------GCGGAGG-ACCu -5'
8968 3' -58.9 NC_002512.2 + 115821 0.69 0.690233
Target:  5'- uGGCCcgCUGCGCCUACCGCUguUCCgGGc -3'
miRNA:   3'- -UUGGa-GGUGUGGAUGGCGG--AGGaCCu -5'
8968 3' -58.9 NC_002512.2 + 86138 0.69 0.69413
Target:  5'- gGACCUggaagCCgACGCCgcgGCCGCCUCCgaggcccugcugcgGGAg -3'
miRNA:   3'- -UUGGA-----GG-UGUGGa--UGGCGGAGGa-------------CCU- -5'
8968 3' -58.9 NC_002512.2 + 91050 0.69 0.69996
Target:  5'- cAUCUCC-CGCCUGUCGUCcgCCUGGAg -3'
miRNA:   3'- uUGGAGGuGUGGAUGGCGGa-GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 149905 0.69 0.709634
Target:  5'- gGACCUCCGCgcgcccuccucgGCCgACCGCUUCCgacGGc -3'
miRNA:   3'- -UUGGAGGUG------------UGGaUGGCGGAGGa--CCu -5'
8968 3' -58.9 NC_002512.2 + 133674 0.69 0.709634
Target:  5'- cGCCgcggCCGCcguggccgACCUcgcgGCCGCCUCCcGGAc -3'
miRNA:   3'- uUGGa---GGUG--------UGGA----UGGCGGAGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 53402 0.69 0.709634
Target:  5'- gGGCUUCCugGCg-GCCGCCaUCCaGGAg -3'
miRNA:   3'- -UUGGAGGugUGgaUGGCGG-AGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 185607 0.69 0.718288
Target:  5'- cGACCUCCugGCCaacggcgucccgUGucggugcagcuguCCGaCCUCCUGGGg -3'
miRNA:   3'- -UUGGAGGugUGG------------AU-------------GGC-GGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 100037 0.69 0.719247
Target:  5'- -uCCUCCGCcuccGCCU-CCGCCUCCa--- -3'
miRNA:   3'- uuGGAGGUG----UGGAuGGCGGAGGaccu -5'
8968 3' -58.9 NC_002512.2 + 190813 0.68 0.738255
Target:  5'- cGACCUgUACACCUuCCuCgUCCUGGGc -3'
miRNA:   3'- -UUGGAgGUGUGGAuGGcGgAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 85596 0.68 0.738255
Target:  5'- cGCgUCCGCguucggguGCCUccGCCGCCUCUgGGAc -3'
miRNA:   3'- uUGgAGGUG--------UGGA--UGGCGGAGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 15873 0.68 0.747634
Target:  5'- -----aCGCACCUAUCGCCUCCgGGc -3'
miRNA:   3'- uuggagGUGUGGAUGGCGGAGGaCCu -5'
8968 3' -58.9 NC_002512.2 + 135421 0.68 0.747634
Target:  5'- gGAUCUCCucCGCCggUCGCUUCCUGGc -3'
miRNA:   3'- -UUGGAGGu-GUGGauGGCGGAGGACCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.