miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 3' -58.9 NC_002512.2 + 204265 1.06 0.003632
Target:  5'- uAACCUCCACACCUACCGCCUCCUGGAc -3'
miRNA:   3'- -UUGGAGGUGUGGAUGGCGGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 2660 0.78 0.245923
Target:  5'- -uCCgCCGCGCCUcccgguccGCCGCCUCCUGGu -3'
miRNA:   3'- uuGGaGGUGUGGA--------UGGCGGAGGACCu -5'
8968 3' -58.9 NC_002512.2 + 358 0.78 0.263574
Target:  5'- cGCCUCCucuCGCCUccucuGCCGCCUCCUGc- -3'
miRNA:   3'- uUGGAGGu--GUGGA-----UGGCGGAGGACcu -5'
8968 3' -58.9 NC_002512.2 + 229761 0.78 0.263574
Target:  5'- cGCCUCCucuCGCCUccucuGCCGCCUCCUGc- -3'
miRNA:   3'- uUGGAGGu--GUGGA-----UGGCGGAGGACcu -5'
8968 3' -58.9 NC_002512.2 + 178486 0.74 0.441735
Target:  5'- cGCUUCCACGuucuCCUugGCCGCCUCCaGGGc -3'
miRNA:   3'- uUGGAGGUGU----GGA--UGGCGGAGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 176662 0.74 0.441735
Target:  5'- --gCUCC-CGCCaGCgCGCCUCCUGGGa -3'
miRNA:   3'- uugGAGGuGUGGaUG-GCGGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 229722 0.73 0.459409
Target:  5'- cGGCCUCC---UCUGCCGCCUCCUGc- -3'
miRNA:   3'- -UUGGAGGuguGGAUGGCGGAGGACcu -5'
8968 3' -58.9 NC_002512.2 + 319 0.73 0.459409
Target:  5'- cGGCCUCC---UCUGCCGCCUCCUGc- -3'
miRNA:   3'- -UUGGAGGuguGGAUGGCGGAGGACcu -5'
8968 3' -58.9 NC_002512.2 + 24491 0.73 0.495838
Target:  5'- gGAgUUCCGCugCgccGCCGCCUuCCUGGGc -3'
miRNA:   3'- -UUgGAGGUGugGa--UGGCGGA-GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 3137 0.72 0.505151
Target:  5'- cGGCCg-CACGCCUccGCCGUCUCCgGGAc -3'
miRNA:   3'- -UUGGagGUGUGGA--UGGCGGAGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 129741 0.72 0.514538
Target:  5'- gAAUgUCCGCGCC-ACgUGCCUCCUGGu -3'
miRNA:   3'- -UUGgAGGUGUGGaUG-GCGGAGGACCu -5'
8968 3' -58.9 NC_002512.2 + 17474 0.72 0.518313
Target:  5'- cGACCUCC-CGCCcgucguccucgucgGCCGCCUCCUcGAu -3'
miRNA:   3'- -UUGGAGGuGUGGa-------------UGGCGGAGGAcCU- -5'
8968 3' -58.9 NC_002512.2 + 175838 0.72 0.523996
Target:  5'- cGCCUCCugcCGCCUcGCCGUuaucUUCCUGGAc -3'
miRNA:   3'- uUGGAGGu--GUGGA-UGGCG----GAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 147993 0.72 0.523996
Target:  5'- cGACCUCCgcgaguACACC-ACgGCCUcCCUGGGc -3'
miRNA:   3'- -UUGGAGG------UGUGGaUGgCGGA-GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 48534 0.71 0.572169
Target:  5'- aAGCUgaUCCACGCgUGCCGCCUgCUGa- -3'
miRNA:   3'- -UUGG--AGGUGUGgAUGGCGGAgGACcu -5'
8968 3' -58.9 NC_002512.2 + 104688 0.71 0.60159
Target:  5'- -uCCUCCGCGuCCUggACgGCCaCCUGGAa -3'
miRNA:   3'- uuGGAGGUGU-GGA--UGgCGGaGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 25033 0.71 0.60159
Target:  5'- gGACCUCCACgaggACCgACCGCCgucgUCCUcccGGAc -3'
miRNA:   3'- -UUGGAGGUG----UGGaUGGCGG----AGGA---CCU- -5'
8968 3' -58.9 NC_002512.2 + 142574 0.7 0.611448
Target:  5'- cACCUCaucguCugCgugGCCGCCUCCUcGGAc -3'
miRNA:   3'- uUGGAGgu---GugGa--UGGCGGAGGA-CCU- -5'
8968 3' -58.9 NC_002512.2 + 23682 0.7 0.62132
Target:  5'- aAGCC-CCAgCACCgccGCUGCUUCCUGGu -3'
miRNA:   3'- -UUGGaGGU-GUGGa--UGGCGGAGGACCu -5'
8968 3' -58.9 NC_002512.2 + 186416 0.7 0.62132
Target:  5'- cGGCUUCCACGCCgUGCUcggccggcuggGCCUCCUGu- -3'
miRNA:   3'- -UUGGAGGUGUGG-AUGG-----------CGGAGGACcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.