miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 3' -58.9 NC_002512.2 + 319 0.73 0.459409
Target:  5'- cGGCCUCC---UCUGCCGCCUCCUGc- -3'
miRNA:   3'- -UUGGAGGuguGGAUGGCGGAGGACcu -5'
8968 3' -58.9 NC_002512.2 + 358 0.78 0.263574
Target:  5'- cGCCUCCucuCGCCUccucuGCCGCCUCCUGc- -3'
miRNA:   3'- uUGGAGGu--GUGGA-----UGGCGGAGGACcu -5'
8968 3' -58.9 NC_002512.2 + 2660 0.78 0.245923
Target:  5'- -uCCgCCGCGCCUcccgguccGCCGCCUCCUGGu -3'
miRNA:   3'- uuGGaGGUGUGGA--------UGGCGGAGGACCu -5'
8968 3' -58.9 NC_002512.2 + 3013 0.67 0.801636
Target:  5'- gGGCCuUCCugGCCUcCCggGCCUcCCUGGc -3'
miRNA:   3'- -UUGG-AGGugUGGAuGG--CGGA-GGACCu -5'
8968 3' -58.9 NC_002512.2 + 3137 0.72 0.505151
Target:  5'- cGGCCg-CACGCCUccGCCGUCUCCgGGAc -3'
miRNA:   3'- -UUGGagGUGUGGA--UGGCGGAGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 4352 0.7 0.632187
Target:  5'- -uCCUCCGCGCCUcCCGCCgUCCcguccgcgaagcccgGGAc -3'
miRNA:   3'- uuGGAGGUGUGGAuGGCGG-AGGa--------------CCU- -5'
8968 3' -58.9 NC_002512.2 + 7536 0.67 0.784123
Target:  5'- cGGCCccgugCCGCuCCU-CCuCCUCCUGGAg -3'
miRNA:   3'- -UUGGa----GGUGuGGAuGGcGGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 7568 0.67 0.792947
Target:  5'- cGCCgCCGCAgCCUccgguACCGCCUCCggcGGc -3'
miRNA:   3'- uUGGaGGUGU-GGA-----UGGCGGAGGa--CCu -5'
8968 3' -58.9 NC_002512.2 + 8810 0.68 0.7661
Target:  5'- -cCC-CCACGCCguuccGCCGCCggagCUUGGGc -3'
miRNA:   3'- uuGGaGGUGUGGa----UGGCGGa---GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 15873 0.68 0.747634
Target:  5'- -----aCGCACCUAUCGCCUCCgGGc -3'
miRNA:   3'- uuggagGUGUGGAUGGCGGAGGaCCu -5'
8968 3' -58.9 NC_002512.2 + 17474 0.72 0.518313
Target:  5'- cGACCUCC-CGCCcgucguccucgucgGCCGCCUCCUcGAu -3'
miRNA:   3'- -UUGGAGGuGUGGa-------------UGGCGGAGGAcCU- -5'
8968 3' -58.9 NC_002512.2 + 18121 0.68 0.7661
Target:  5'- gGGCCUCCACGuCCUcCCGCagcgCCcGGGc -3'
miRNA:   3'- -UUGGAGGUGU-GGAuGGCGga--GGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 19194 0.66 0.865397
Target:  5'- uGAUCUCCcgcgGCGCCuUGCCGUUgcgCUUGGAc -3'
miRNA:   3'- -UUGGAGG----UGUGG-AUGGCGGa--GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 21126 0.66 0.858049
Target:  5'- uGGCCUUC-CGCUU-CgGCUUCCUGGGc -3'
miRNA:   3'- -UUGGAGGuGUGGAuGgCGGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 23682 0.7 0.62132
Target:  5'- aAGCC-CCAgCACCgccGCUGCUUCCUGGu -3'
miRNA:   3'- -UUGGaGGU-GUGGa--UGGCGGAGGACCu -5'
8968 3' -58.9 NC_002512.2 + 24491 0.73 0.495838
Target:  5'- gGAgUUCCGCugCgccGCCGCCUuCCUGGGc -3'
miRNA:   3'- -UUgGAGGUGugGa--UGGCGGA-GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 25033 0.71 0.60159
Target:  5'- gGACCUCCACgaggACCgACCGCCgucgUCCUcccGGAc -3'
miRNA:   3'- -UUGGAGGUG----UGGaUGGCGG----AGGA---CCU- -5'
8968 3' -58.9 NC_002512.2 + 36190 0.68 0.775171
Target:  5'- cGACCUCCAUcgucccCCgggACCGacugcgggagcCCUCCUGGGu -3'
miRNA:   3'- -UUGGAGGUGu-----GGa--UGGC-----------GGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 40955 0.66 0.850512
Target:  5'- cGACCgCCGCGCC--CCGCCaCCgGGAc -3'
miRNA:   3'- -UUGGaGGUGUGGauGGCGGaGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 41111 0.67 0.792947
Target:  5'- aGGCCggagCCGCcGCCggaACCGCC-CUUGGAc -3'
miRNA:   3'- -UUGGa---GGUG-UGGa--UGGCGGaGGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.