miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 3' -58.9 NC_002512.2 + 229761 0.78 0.263574
Target:  5'- cGCCUCCucuCGCCUccucuGCCGCCUCCUGc- -3'
miRNA:   3'- uUGGAGGu--GUGGA-----UGGCGGAGGACcu -5'
8968 3' -58.9 NC_002512.2 + 229722 0.73 0.459409
Target:  5'- cGGCCUCC---UCUGCCGCCUCCUGc- -3'
miRNA:   3'- -UUGGAGGuguGGAUGGCGGAGGACcu -5'
8968 3' -58.9 NC_002512.2 + 223475 0.66 0.858049
Target:  5'- cGCCUUCcccaGCGCCgccGCCGCCUCCcUGc- -3'
miRNA:   3'- uUGGAGG----UGUGGa--UGGCGGAGG-ACcu -5'
8968 3' -58.9 NC_002512.2 + 219375 0.68 0.775171
Target:  5'- cGCCUCUGCucCCUggGCUGCCUCCgcUGGu -3'
miRNA:   3'- uUGGAGGUGu-GGA--UGGCGGAGG--ACCu -5'
8968 3' -58.9 NC_002512.2 + 219161 0.67 0.792071
Target:  5'- cACCUCCGCcgaggacuucgccGCCgucggcUACCGCUUCCUGu- -3'
miRNA:   3'- uUGGAGGUG-------------UGG------AUGGCGGAGGACcu -5'
8968 3' -58.9 NC_002512.2 + 216382 0.68 0.7661
Target:  5'- cAGCUUCCugGCC-GCCGUCUCCg--- -3'
miRNA:   3'- -UUGGAGGugUGGaUGGCGGAGGaccu -5'
8968 3' -58.9 NC_002512.2 + 215838 0.7 0.660814
Target:  5'- cGGCCggaaCGCGCC-GCCGCCUUCgGGAa -3'
miRNA:   3'- -UUGGag--GUGUGGaUGGCGGAGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 215677 0.67 0.792947
Target:  5'- cGCUUCCGuCACCgGCUGCCcUUCUGGu -3'
miRNA:   3'- uUGGAGGU-GUGGaUGGCGG-AGGACCu -5'
8968 3' -58.9 NC_002512.2 + 215483 0.69 0.689258
Target:  5'- -uCCUCCugGCGCCUGCucuacuuCGCCUCCgUGGu -3'
miRNA:   3'- uuGGAGG--UGUGGAUG-------GCGGAGG-ACCu -5'
8968 3' -58.9 NC_002512.2 + 214477 0.66 0.834888
Target:  5'- uGCUUCCACcgcggcgUCUuCCGCCUCCUGcGGa -3'
miRNA:   3'- uUGGAGGUGu------GGAuGGCGGAGGAC-CU- -5'
8968 3' -58.9 NC_002512.2 + 214344 0.66 0.861012
Target:  5'- cGGCCUCCucagcgagagccagaGCGCCUuCUGgCUCCgGGAc -3'
miRNA:   3'- -UUGGAGG---------------UGUGGAuGGCgGAGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 211810 0.66 0.858049
Target:  5'- cGCCgcggCGCACCUAuuUCGaCUUCCUGGAc -3'
miRNA:   3'- uUGGag--GUGUGGAU--GGC-GGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 204265 1.06 0.003632
Target:  5'- uAACCUCCACACCUACCGCCUCCUGGAc -3'
miRNA:   3'- -UUGGAGGUGUGGAUGGCGGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 201806 0.67 0.792947
Target:  5'- cGACCUCUcCGCCgucuCCGCCgcgCCcGGGg -3'
miRNA:   3'- -UUGGAGGuGUGGau--GGCGGa--GGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 197231 0.67 0.810183
Target:  5'- uGCCUcaaCCGCAUCUACCGCCUggCCg--- -3'
miRNA:   3'- uUGGA---GGUGUGGAUGGCGGA--GGaccu -5'
8968 3' -58.9 NC_002512.2 + 196077 0.66 0.865397
Target:  5'- gGGCCUUCGC-CCUGCuCGCgCUCCUc-- -3'
miRNA:   3'- -UUGGAGGUGuGGAUG-GCG-GAGGAccu -5'
8968 3' -58.9 NC_002512.2 + 194610 0.66 0.858049
Target:  5'- -cCCUCCGcCGCCgcgGCCGUCgCCgcgGGGg -3'
miRNA:   3'- uuGGAGGU-GUGGa--UGGCGGaGGa--CCU- -5'
8968 3' -58.9 NC_002512.2 + 192902 0.66 0.858049
Target:  5'- cGCgCUCCGCGgCgguccagaGCCGCCUCCgaugccagGGAu -3'
miRNA:   3'- uUG-GAGGUGUgGa-------UGGCGGAGGa-------CCU- -5'
8968 3' -58.9 NC_002512.2 + 190813 0.68 0.738255
Target:  5'- cGACCUgUACACCUuCCuCgUCCUGGGc -3'
miRNA:   3'- -UUGGAgGUGUGGAuGGcGgAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 186416 0.7 0.62132
Target:  5'- cGGCUUCCACGCCgUGCUcggccggcuggGCCUCCUGu- -3'
miRNA:   3'- -UUGGAGGUGUGG-AUGG-----------CGGAGGACcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.