miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 3' -58.9 NC_002512.2 + 119001 0.68 0.7661
Target:  5'- uGGCCUCCGC-CaagcGCCuCCUCCUGGu -3'
miRNA:   3'- -UUGGAGGUGuGga--UGGcGGAGGACCu -5'
8968 3' -58.9 NC_002512.2 + 53402 0.69 0.709634
Target:  5'- gGGCUUCCugGCg-GCCGCCaUCCaGGAg -3'
miRNA:   3'- -UUGGAGGugUGgaUGGCGG-AGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 133674 0.69 0.709634
Target:  5'- cGCCgcggCCGCcguggccgACCUcgcgGCCGCCUCCcGGAc -3'
miRNA:   3'- uUGGa---GGUG--------UGGA----UGGCGGAGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 85596 0.68 0.738255
Target:  5'- cGCgUCCGCguucggguGCCUccGCCGCCUCUgGGAc -3'
miRNA:   3'- uUGgAGGUG--------UGGA--UGGCGGAGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 15873 0.68 0.747634
Target:  5'- -----aCGCACCUAUCGCCUCCgGGc -3'
miRNA:   3'- uuggagGUGUGGAUGGCGGAGGaCCu -5'
8968 3' -58.9 NC_002512.2 + 102788 0.68 0.747634
Target:  5'- cAUCUCCGcCGCCgccGCCGCcCUCCgcuccgGGAa -3'
miRNA:   3'- uUGGAGGU-GUGGa--UGGCG-GAGGa-----CCU- -5'
8968 3' -58.9 NC_002512.2 + 135749 0.68 0.747634
Target:  5'- uGCCUCCGcCGCgUcauCCGCgUCCUGGc -3'
miRNA:   3'- uUGGAGGU-GUGgAu--GGCGgAGGACCu -5'
8968 3' -58.9 NC_002512.2 + 135421 0.68 0.747634
Target:  5'- gGAUCUCCucCGCCggUCGCUUCCUGGc -3'
miRNA:   3'- -UUGGAGGu-GUGGauGGCGGAGGACCu -5'
8968 3' -58.9 NC_002512.2 + 64469 0.68 0.756919
Target:  5'- cGAUCUCgUAgGCCcGCCGgcCCUCCUGGAc -3'
miRNA:   3'- -UUGGAG-GUgUGGaUGGC--GGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 86138 0.69 0.69413
Target:  5'- gGACCUggaagCCgACGCCgcgGCCGCCUCCgaggcccugcugcgGGAg -3'
miRNA:   3'- -UUGGA-----GG-UGUGGa--UGGCGGAGGa-------------CCU- -5'
8968 3' -58.9 NC_002512.2 + 115821 0.69 0.690233
Target:  5'- uGGCCcgCUGCGCCUACCGCUguUCCgGGc -3'
miRNA:   3'- -UUGGa-GGUGUGGAUGGCGG--AGGaCCu -5'
8968 3' -58.9 NC_002512.2 + 85845 0.69 0.670652
Target:  5'- cGGCgCUCC-CGCCUagACCGCCUUCUGu- -3'
miRNA:   3'- -UUG-GAGGuGUGGA--UGGCGGAGGACcu -5'
8968 3' -58.9 NC_002512.2 + 24491 0.73 0.495838
Target:  5'- gGAgUUCCGCugCgccGCCGCCUuCCUGGGc -3'
miRNA:   3'- -UUgGAGGUGugGa--UGGCGGA-GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 129741 0.72 0.514538
Target:  5'- gAAUgUCCGCGCC-ACgUGCCUCCUGGu -3'
miRNA:   3'- -UUGgAGGUGUGGaUG-GCGGAGGACCu -5'
8968 3' -58.9 NC_002512.2 + 17474 0.72 0.518313
Target:  5'- cGACCUCC-CGCCcgucguccucgucgGCCGCCUCCUcGAu -3'
miRNA:   3'- -UUGGAGGuGUGGa-------------UGGCGGAGGAcCU- -5'
8968 3' -58.9 NC_002512.2 + 48534 0.71 0.572169
Target:  5'- aAGCUgaUCCACGCgUGCCGCCUgCUGa- -3'
miRNA:   3'- -UUGG--AGGUGUGgAUGGCGGAgGACcu -5'
8968 3' -58.9 NC_002512.2 + 25033 0.71 0.60159
Target:  5'- gGACCUCCACgaggACCgACCGCCgucgUCCUcccGGAc -3'
miRNA:   3'- -UUGGAGGUG----UGGaUGGCGG----AGGA---CCU- -5'
8968 3' -58.9 NC_002512.2 + 104688 0.71 0.60159
Target:  5'- -uCCUCCGCGuCCUggACgGCCaCCUGGAa -3'
miRNA:   3'- uuGGAGGUGU-GGA--UGgCGGaGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 23682 0.7 0.62132
Target:  5'- aAGCC-CCAgCACCgccGCUGCUUCCUGGu -3'
miRNA:   3'- -UUGGaGGU-GUGGa--UGGCGGAGGACCu -5'
8968 3' -58.9 NC_002512.2 + 4352 0.7 0.632187
Target:  5'- -uCCUCCGCGCCUcCCGCCgUCCcguccgcgaagcccgGGAc -3'
miRNA:   3'- uuGGAGGUGUGGAuGGCGG-AGGa--------------CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.