miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 3' -58.9 NC_002512.2 + 170889 0.66 0.872549
Target:  5'- --gCUCCuCGCCgACgGCCgCCUGGAc -3'
miRNA:   3'- uugGAGGuGUGGaUGgCGGaGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 96963 0.67 0.810183
Target:  5'- cGCCaUCCAcCACCUgacGCCGCaccuguaCCUGGAc -3'
miRNA:   3'- uUGG-AGGU-GUGGA---UGGCGga-----GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 201806 0.67 0.792947
Target:  5'- cGACCUCUcCGCCgucuCCGCCgcgCCcGGGg -3'
miRNA:   3'- -UUGGAGGuGUGGau--GGCGGa--GGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 204265 1.06 0.003632
Target:  5'- uAACCUCCACACCUACCGCCUCCUGGAc -3'
miRNA:   3'- -UUGGAGGUGUGGAUGGCGGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 172312 0.66 0.865397
Target:  5'- uGACCcgCCAUACCU-UCGuCCUCCUGu- -3'
miRNA:   3'- -UUGGa-GGUGUGGAuGGC-GGAGGACcu -5'
8968 3' -58.9 NC_002512.2 + 96009 0.66 0.865397
Target:  5'- cGGCCgagCCGCuCCUcgaGCCGCC-CCaGGAc -3'
miRNA:   3'- -UUGGa--GGUGuGGA---UGGCGGaGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 148945 0.66 0.865397
Target:  5'- aGACCcgggaCgGCACCUACCGCCg---GGAg -3'
miRNA:   3'- -UUGGa----GgUGUGGAUGGCGGaggaCCU- -5'
8968 3' -58.9 NC_002512.2 + 214344 0.66 0.861012
Target:  5'- cGGCCUCCucagcgagagccagaGCGCCUuCUGgCUCCgGGAc -3'
miRNA:   3'- -UUGGAGG---------------UGUGGAuGGCgGAGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 194610 0.66 0.858049
Target:  5'- -cCCUCCGcCGCCgcgGCCGUCgCCgcgGGGg -3'
miRNA:   3'- uuGGAGGU-GUGGa--UGGCGGaGGa--CCU- -5'
8968 3' -58.9 NC_002512.2 + 197231 0.67 0.810183
Target:  5'- uGCCUcaaCCGCAUCUACCGCCUggCCg--- -3'
miRNA:   3'- uUGGA---GGUGUGGAUGGCGGA--GGaccu -5'
8968 3' -58.9 NC_002512.2 + 214477 0.66 0.834888
Target:  5'- uGCUUCCACcgcggcgUCUuCCGCCUCCUGcGGa -3'
miRNA:   3'- uUGGAGGUGu------GGAuGGCGGAGGAC-CU- -5'
8968 3' -58.9 NC_002512.2 + 211810 0.66 0.858049
Target:  5'- cGCCgcggCGCACCUAuuUCGaCUUCCUGGAc -3'
miRNA:   3'- uUGGag--GUGUGGAU--GGC-GGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 121465 0.66 0.872549
Target:  5'- cGCC-CCGCGCCcGCCGCCgUCCc--- -3'
miRNA:   3'- uUGGaGGUGUGGaUGGCGG-AGGaccu -5'
8968 3' -58.9 NC_002512.2 + 149950 0.66 0.834089
Target:  5'- gGACCcCCGCGCCgccuCgGCCUucgagcccuucacCCUGGAc -3'
miRNA:   3'- -UUGGaGGUGUGGau--GgCGGA-------------GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 96656 0.66 0.872549
Target:  5'- cGCCgCCGC-CCUcCCGuCCUCgCUGGGc -3'
miRNA:   3'- uUGGaGGUGuGGAuGGC-GGAG-GACCU- -5'
8968 3' -58.9 NC_002512.2 + 223475 0.66 0.858049
Target:  5'- cGCCUUCcccaGCGCCgccGCCGCCUCCcUGc- -3'
miRNA:   3'- uUGGAGG----UGUGGa--UGGCGGAGG-ACcu -5'
8968 3' -58.9 NC_002512.2 + 137921 0.67 0.818578
Target:  5'- -cCCUCCGgACgUGCCGCUccgcCCUGGc -3'
miRNA:   3'- uuGGAGGUgUGgAUGGCGGa---GGACCu -5'
8968 3' -58.9 NC_002512.2 + 101175 0.67 0.801636
Target:  5'- cAGCCUCCACACCUGCCcgaaggaCC-CCUu-- -3'
miRNA:   3'- -UUGGAGGUGUGGAUGGc------GGaGGAccu -5'
8968 3' -58.9 NC_002512.2 + 196077 0.66 0.865397
Target:  5'- gGGCCUUCGC-CCUGCuCGCgCUCCUc-- -3'
miRNA:   3'- -UUGGAGGUGuGGAUG-GCG-GAGGAccu -5'
8968 3' -58.9 NC_002512.2 + 133340 0.66 0.865397
Target:  5'- gAugCUCC-CGCCgcccgauCCGCUUCCUGa- -3'
miRNA:   3'- -UugGAGGuGUGGau-----GGCGGAGGACcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.