miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 3' -58.9 NC_002512.2 + 46445 0.7 0.64108
Target:  5'- cGGCgUCCugACCguggGCCGCgCUugCCUGGAc -3'
miRNA:   3'- -UUGgAGGugUGGa---UGGCG-GA--GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 48302 0.66 0.865397
Target:  5'- gGACCcgCCGCcCCUGCCGCCgCagacGGAc -3'
miRNA:   3'- -UUGGa-GGUGuGGAUGGCGGaGga--CCU- -5'
8968 3' -58.9 NC_002512.2 + 48534 0.71 0.572169
Target:  5'- aAGCUgaUCCACGCgUGCCGCCUgCUGa- -3'
miRNA:   3'- -UUGG--AGGUGUGgAUGGCGGAgGACcu -5'
8968 3' -58.9 NC_002512.2 + 51999 0.66 0.858049
Target:  5'- gAACCUgaucgaGCACCUACCGCCgucgacgaUCCgcgaGGAg -3'
miRNA:   3'- -UUGGAgg----UGUGGAUGGCGG--------AGGa---CCU- -5'
8968 3' -58.9 NC_002512.2 + 53402 0.69 0.709634
Target:  5'- gGGCUUCCugGCg-GCCGCCaUCCaGGAg -3'
miRNA:   3'- -UUGGAGGugUGgaUGGCGG-AGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 54127 0.66 0.858049
Target:  5'- cACC-CCGCugUU-CCGCUgCCUGGAc -3'
miRNA:   3'- uUGGaGGUGugGAuGGCGGaGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 56230 0.66 0.865397
Target:  5'- -uCCUCCuucUugCUGCCGCCgccCCcGGAc -3'
miRNA:   3'- uuGGAGGu--GugGAUGGCGGa--GGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 64469 0.68 0.756919
Target:  5'- cGAUCUCgUAgGCCcGCCGgcCCUCCUGGAc -3'
miRNA:   3'- -UUGGAG-GUgUGGaUGGC--GGAGGACCU- -5'
8968 3' -58.9 NC_002512.2 + 85596 0.68 0.738255
Target:  5'- cGCgUCCGCguucggguGCCUccGCCGCCUCUgGGAc -3'
miRNA:   3'- uUGgAGGUG--------UGGA--UGGCGGAGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 85845 0.69 0.670652
Target:  5'- cGGCgCUCC-CGCCUagACCGCCUUCUGu- -3'
miRNA:   3'- -UUG-GAGGuGUGGA--UGGCGGAGGACcu -5'
8968 3' -58.9 NC_002512.2 + 86138 0.69 0.69413
Target:  5'- gGACCUggaagCCgACGCCgcgGCCGCCUCCgaggcccugcugcgGGAg -3'
miRNA:   3'- -UUGGA-----GG-UGUGGa--UGGCGGAGGa-------------CCU- -5'
8968 3' -58.9 NC_002512.2 + 91050 0.69 0.69996
Target:  5'- cAUCUCC-CGCCUGUCGUCcgCCUGGAg -3'
miRNA:   3'- uUGGAGGuGUGGAUGGCGGa-GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 96009 0.66 0.865397
Target:  5'- cGGCCgagCCGCuCCUcgaGCCGCC-CCaGGAc -3'
miRNA:   3'- -UUGGa--GGUGuGGA---UGGCGGaGGaCCU- -5'
8968 3' -58.9 NC_002512.2 + 96656 0.66 0.872549
Target:  5'- cGCCgCCGC-CCUcCCGuCCUCgCUGGGc -3'
miRNA:   3'- uUGGaGGUGuGGAuGGC-GGAG-GACCU- -5'
8968 3' -58.9 NC_002512.2 + 96963 0.67 0.810183
Target:  5'- cGCCaUCCAcCACCUgacGCCGCaccuguaCCUGGAc -3'
miRNA:   3'- uUGG-AGGU-GUGGA---UGGCGga-----GGACCU- -5'
8968 3' -58.9 NC_002512.2 + 97914 0.66 0.872549
Target:  5'- cGACCUCguucuuCGCCUACCGCgaUCCgccGGGc -3'
miRNA:   3'- -UUGGAGgu----GUGGAUGGCGg-AGGa--CCU- -5'
8968 3' -58.9 NC_002512.2 + 99208 0.66 0.850512
Target:  5'- aGAUCUCCGCGgCcGCCGCCgUgUGGGu -3'
miRNA:   3'- -UUGGAGGUGUgGaUGGCGGaGgACCU- -5'
8968 3' -58.9 NC_002512.2 + 100037 0.69 0.719247
Target:  5'- -uCCUCCGCcuccGCCU-CCGCCUCCa--- -3'
miRNA:   3'- uuGGAGGUG----UGGAuGGCGGAGGaccu -5'
8968 3' -58.9 NC_002512.2 + 101175 0.67 0.801636
Target:  5'- cAGCCUCCACACCUGCCcgaaggaCC-CCUu-- -3'
miRNA:   3'- -UUGGAGGUGUGGAUGGc------GGaGGAccu -5'
8968 3' -58.9 NC_002512.2 + 102788 0.68 0.747634
Target:  5'- cAUCUCCGcCGCCgccGCCGCcCUCCgcuccgGGAa -3'
miRNA:   3'- uUGGAGGU-GUGGa--UGGCG-GAGGa-----CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.