Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8969 | 3' | -54.5 | NC_002512.2 | + | 119948 | 0.68 | 0.953087 |
Target: 5'- cCGCACgcgGUgGACUUCGUGGcGCUGGGg- -3' miRNA: 3'- -GCGUG---UAgCUGGAGUACC-UGGCCUag -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 104804 | 0.68 | 0.953087 |
Target: 5'- aGCACgAUCaACCUCGacaGGGCgGGGUCc -3' miRNA: 3'- gCGUG-UAGcUGGAGUa--CCUGgCCUAG- -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 190740 | 0.68 | 0.950701 |
Target: 5'- cCGUACugaucUCGGaggccgggacgcucuUCUaCGUGGACCGGGUCa -3' miRNA: 3'- -GCGUGu----AGCU---------------GGA-GUACCUGGCCUAG- -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 211817 | 0.68 | 0.949067 |
Target: 5'- gCGCACcuauuUCGACUUCcUGGAccCCGGGcUCu -3' miRNA: 3'- -GCGUGu----AGCUGGAGuACCU--GGCCU-AG- -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 94644 | 0.68 | 0.949067 |
Target: 5'- gGCGCGgacgaCGGCCUCGaggcggcccgGGGCCGGGg- -3' miRNA: 3'- gCGUGUa----GCUGGAGUa---------CCUGGCCUag -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 187099 | 0.68 | 0.949067 |
Target: 5'- gGC-CGUCGACCgacagcccuaCGUGGACCaGGggCa -3' miRNA: 3'- gCGuGUAGCUGGa---------GUACCUGG-CCuaG- -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 215327 | 0.68 | 0.944824 |
Target: 5'- gGCAC--CGGCUUCcucGACCGGAUCg -3' miRNA: 3'- gCGUGuaGCUGGAGuacCUGGCCUAG- -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 216043 | 0.68 | 0.944824 |
Target: 5'- gCGCGCGagugCGACgggcgUUcgGGGCCGGGUCc -3' miRNA: 3'- -GCGUGUa---GCUGg----AGuaCCUGGCCUAG- -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 203120 | 0.68 | 0.940356 |
Target: 5'- aGgGCGUCGGCCgagUCGUGGGCC--AUCa -3' miRNA: 3'- gCgUGUAGCUGG---AGUACCUGGccUAG- -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 85281 | 0.68 | 0.940356 |
Target: 5'- aGCGCGgcgCgGACCUCGUGcGAggGGAUCg -3' miRNA: 3'- gCGUGUa--G-CUGGAGUAC-CUggCCUAG- -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 62748 | 0.68 | 0.940356 |
Target: 5'- gGCACGcCGACCUCGgaGACCaGGAacUCg -3' miRNA: 3'- gCGUGUaGCUGGAGUacCUGG-CCU--AG- -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 206795 | 0.68 | 0.940356 |
Target: 5'- cCGCACGcCGAaCUCcgGGAuCCGGAa- -3' miRNA: 3'- -GCGUGUaGCUgGAGuaCCU-GGCCUag -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 113646 | 0.68 | 0.930737 |
Target: 5'- uGCAgGgUGGCCUCGUGGuucuCCGGGg- -3' miRNA: 3'- gCGUgUaGCUGGAGUACCu---GGCCUag -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 184042 | 0.68 | 0.930737 |
Target: 5'- cCGCugGUCGAgUUCGUGugaGACCGcGUCg -3' miRNA: 3'- -GCGugUAGCUgGAGUAC---CUGGCcUAG- -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 224910 | 0.68 | 0.930737 |
Target: 5'- uCGC-CGUCuGcACCUCcgucgcggGGACCGGGUCc -3' miRNA: 3'- -GCGuGUAG-C-UGGAGua------CCUGGCCUAG- -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 195370 | 0.69 | 0.920203 |
Target: 5'- uGCugGUCGGCUgCcUGGucaccuGCCGGGUCg -3' miRNA: 3'- gCGugUAGCUGGaGuACC------UGGCCUAG- -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 99102 | 0.69 | 0.919652 |
Target: 5'- uGCGCGUCGGcggcccuCCUCGUGGuCCGcgccgcggcGAUCu -3' miRNA: 3'- gCGUGUAGCU-------GGAGUACCuGGC---------CUAG- -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 184735 | 0.69 | 0.908754 |
Target: 5'- gCGCGCAUCGACgaCGUgaGGAUCGGc-- -3' miRNA: 3'- -GCGUGUAGCUGgaGUA--CCUGGCCuag -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 182283 | 0.69 | 0.908754 |
Target: 5'- uGCACGUCcguccgcucccuGGCCgUCAgGGACCGGGa- -3' miRNA: 3'- gCGUGUAG------------CUGG-AGUaCCUGGCCUag -5' |
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8969 | 3' | -54.5 | NC_002512.2 | + | 30682 | 0.69 | 0.906356 |
Target: 5'- gCGCGgucggacgacaaccCGUaCGACCUCAUGGAggccgucgaggacCUGGAUCu -3' miRNA: 3'- -GCGU--------------GUA-GCUGGAGUACCU-------------GGCCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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