miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8969 3' -54.5 NC_002512.2 + 89723 0.66 0.972751
Target:  5'- gGCGgGU-GACCUUG-GGACCGGAggUCg -3'
miRNA:   3'- gCGUgUAgCUGGAGUaCCUGGCCU--AG- -5'
8969 3' -54.5 NC_002512.2 + 10532 0.66 0.972751
Target:  5'- gGCGCAg-GACCUCGcGGacGCCGGGc- -3'
miRNA:   3'- gCGUGUagCUGGAGUaCC--UGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 43628 0.66 0.972751
Target:  5'- aGCugAagaaGACCUCGUgaccgaGGACCGGGa- -3'
miRNA:   3'- gCGugUag--CUGGAGUA------CCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 2477 0.67 0.971112
Target:  5'- gCGCGCGagaguagguccgggCGGCCUUggGGAaCGGAUCu -3'
miRNA:   3'- -GCGUGUa-------------GCUGGAGuaCCUgGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 23115 0.67 0.969981
Target:  5'- aCGCAC-UUaACCUCGUGGACauauauGGAUg -3'
miRNA:   3'- -GCGUGuAGcUGGAGUACCUGg-----CCUAg -5'
8969 3' -54.5 NC_002512.2 + 174698 0.67 0.969981
Target:  5'- aGCAgGUUGGCCgCGUGGauGCCGuaGGUCa -3'
miRNA:   3'- gCGUgUAGCUGGaGUACC--UGGC--CUAG- -5'
8969 3' -54.5 NC_002512.2 + 91207 0.67 0.968225
Target:  5'- gCGCACGcCGgcgacgacagguacuGCCgauaCGUGGAUUGGAUCg -3'
miRNA:   3'- -GCGUGUaGC---------------UGGa---GUACCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 138022 0.67 0.966086
Target:  5'- aCGUACGgaucCGACUUCcgagccgacauccuGcgGGACCGGAUCc -3'
miRNA:   3'- -GCGUGUa---GCUGGAG--------------Ua-CCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 94563 0.67 0.963847
Target:  5'- gGCGCGgcugacgcCGACCUCggGGaccGCCGGAc- -3'
miRNA:   3'- gCGUGUa-------GCUGGAGuaCC---UGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 211872 0.67 0.963847
Target:  5'- aGCAuCGUCGGCgC-CcUGGAgCGGGUCa -3'
miRNA:   3'- gCGU-GUAGCUG-GaGuACCUgGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 86074 0.67 0.963847
Target:  5'- gGCuCAUCGAC---AUGGACCGGGa- -3'
miRNA:   3'- gCGuGUAGCUGgagUACCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 85186 0.67 0.963847
Target:  5'- gGCGCGaCGGguCCcCGUGGgucGCCGGGUCg -3'
miRNA:   3'- gCGUGUaGCU--GGaGUACC---UGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 79674 0.67 0.963847
Target:  5'- uCGCcucccCggCGGCCUCcgGGuucCCGGAUCc -3'
miRNA:   3'- -GCGu----GuaGCUGGAGuaCCu--GGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 132034 0.67 0.960473
Target:  5'- aCGU-CGUCGGCCag--GGACCGGAg- -3'
miRNA:   3'- -GCGuGUAGCUGGaguaCCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 152601 0.67 0.960473
Target:  5'- aCGCGaaccggguuUCGAgCUCcgGGGCCGGGg- -3'
miRNA:   3'- -GCGUgu-------AGCUgGAGuaCCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 225568 0.67 0.960473
Target:  5'- gGCgACGaggcCGACCUCGaggGGcGCCGGGUCu -3'
miRNA:   3'- gCG-UGUa---GCUGGAGUa--CC-UGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 95680 0.67 0.958348
Target:  5'- gCGCGCGUCcgccgGGCCUCcggcggggacgggGGGCCGGGa- -3'
miRNA:   3'- -GCGUGUAG-----CUGGAGua-----------CCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 11582 0.67 0.956888
Target:  5'- aGCACGagCGGCCgccCA-GGGCCGGGg- -3'
miRNA:   3'- gCGUGUa-GCUGGa--GUaCCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 83814 0.67 0.956888
Target:  5'- gCGCGCcggCGGCggcggCUCcgGGcCCGGGUCg -3'
miRNA:   3'- -GCGUGua-GCUG-----GAGuaCCuGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 209178 0.67 0.956888
Target:  5'- gCGCGCAa-GAuCCUCGUGGACgaGGAg- -3'
miRNA:   3'- -GCGUGUagCU-GGAGUACCUGg-CCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.